sequence-formats 1.5.1.1 → 1.5.1.2

raw patch · 3 files changed

+5/−3 lines, 3 filesPVP: minor bump suggested

API additions: PVP suggests at least a minor version bump

API changes (from Hackage documentation)

+ SequenceFormats.Plink: readPlink :: MonadSafe m => FilePath -> FilePath -> FilePath -> m ([EigenstratIndEntry], Producer (EigenstratSnpEntry, GenoLine) m ())

Changelog.md view

@@ -1,3 +1,5 @@+V 1.5.1.2: added readPlink to export list of Plink module.+ V 1.5.1: minor updates for hackage  V 1.5.0: Added Plink support.

sequence-formats.cabal view

@@ -1,5 +1,5 @@ name:                sequence-formats-version:             1.5.1.1+version:             1.5.1.2 synopsis:            A package with basic parsing utilities for several Bioinformatic data formats. description:         Contains utilities to parse and write Eigenstrat, Fasta, FreqSum, VCF, Plink and other file formats used in population genetics analyses. license:             GPL-3

src/SequenceFormats/Plink.hs view

@@ -1,6 +1,6 @@ {-# LANGUAGE BinaryLiterals    #-} {-# LANGUAGE OverloadedStrings #-}-module SequenceFormats.Plink (readBimStdIn, readBimFile, writeBim, readFamFile, readPlinkBedFile) where+module SequenceFormats.Plink (readBimStdIn, readBimFile, writeBim, readFamFile, readPlinkBedFile, readPlink) where  import           SequenceFormats.Eigenstrat       (EigenstratIndEntry (..),                                                    EigenstratSnpEntry (..),@@ -24,7 +24,7 @@ import           Pipes.Attoparsec                 (ParsingError (..), parse) import qualified Pipes.ByteString                 as PB import qualified Pipes.Prelude                    as P-import           Pipes.Safe                       (MonadSafe, runSafeT)+import           Pipes.Safe                       (MonadSafe) import qualified Pipes.Safe.Prelude import           System.IO                        (Handle, IOMode (..),                                                    withFile)