name: sequence-formats
version: 1.5.1.2
synopsis: A package with basic parsing utilities for several Bioinformatic data formats.
description: Contains utilities to parse and write Eigenstrat, Fasta, FreqSum, VCF, Plink and other file formats used in population genetics analyses.
license: GPL-3
license-file: LICENSE
author: Stephan Schiffels
maintainer: stephan.schiffels@mac.com
category: Bioinformatics
build-type: Simple
cabal-version: >=1.10
Homepage: https://github.com/stschiff/sequence-formats
Bug-Reports: https://github.com/stschiff/sequence-formats/issues
extra-source-files: README.md,
Changelog.md,
testDat/example.bim,
testDat/example.eigenstratgeno,
testDat/example.fasta,
testDat/example.freqsum,
testDat/example.histogram.txt,
testDat/example.ind,
testDat/example.snp,
testDat/example.vcf,
testDat/example.pileup
testDat/example.fam
testDat/example.plink.bed
testDat/example.plink.fam
testDat/example.plink.bim
library
exposed-modules: SequenceFormats.RareAlleleHistogram,
SequenceFormats.FreqSum,
SequenceFormats.Fasta,
SequenceFormats.VCF,
SequenceFormats.Eigenstrat,
SequenceFormats.Plink,
SequenceFormats.Utils,
SequenceFormats.Pileup
hs-source-dirs: src
build-depends: base >= 4.7 && < 5, containers, errors, attoparsec, pipes,
transformers, bytestring, lens-family,
pipes-bytestring, foldl, exceptions, pipes-safe,
pipes-attoparsec, vector
default-language: Haskell2010
Test-Suite sequenceFormatTests
type: exitcode-stdio-1.0
main-is: Spec.hs
hs-source-dirs: test
build-depends: base, sequence-formats, foldl, pipes, pipes-safe, tasty, vector,
transformers, tasty-hunit, bytestring, containers, hspec
other-modules: SequenceFormats.EigenstratSpec,
SequenceFormats.FastaSpec,
SequenceFormats.FreqSumSpec,
SequenceFormats.RareAlleleHistogramSpec,
SequenceFormats.UtilsSpec,
SequenceFormats.PlinkSpec,
SequenceFormats.VCFSpec,
SequenceFormats.PileupSpec
default-language: Haskell2010