ViennaRNAParser 1.3.1 → 1.3.2

raw patch · 3 files changed

+7/−5 lines, 3 filesPVP ok

version bump matches the API change (PVP)

API changes (from Hackage documentation)

Files

• ViennaRNAParser.cabal +4/−4
• changelog +2/−0
• src/Bio/RNAalifoldParser.hs +1/−1

@@ -5,13 +5,13 @@ -- PVP summary:      +-+------- breaking API changes --                   | | +----- non-breaking API additions --                   | | | +--- code changes with no API change-version:             1.3.1+version:             1.3.2 synopsis:            Libary for parsing ViennaRNA package output description:         Currently contains parsers and datatypes for: RNAalifold, RNAcode, RNAdistance, RNAcofold, RNAfold, RNAplex, RNAup, RNAz. 		     . 		     For more information on the ViennaRNA package refer to <http://www.tbi.univie.ac.at/RNA/>. 		     .-		     The libary is tested with Version 2.2.4 of the ViennaRNA package.                      +		     The libary is tested with Version 2.3.2 of the ViennaRNA package.                       license:             GPL license-file:        LICENSE author:              Florian Eggenhofer@@ -30,8 +30,8 @@  source-repository this   type:     git-  location: https://github.com/eggzilla/ViennaRNAParser/tree/1.3.1-  tag:      1.3.1+  location: https://github.com/eggzilla/ViennaRNAParser/tree/1.3.2+  tag:      1.3.2  library   -- Modules exported by the library.

@@ -1,4 +1,6 @@ -*-change-log-*-+1.3.2 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 20. January 2017+        * Fix for RNAalifold systemcall function 1.3.1 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 23. October 2016         * Improvements to RNAcode parser, 	* Improvements to travis testing

@@ -17,7 +17,7 @@  --- | Run external RNAalifold command and read the output into the corresponding datatype systemRNAalifold :: String -> String -> String -> IO ExitCode-systemRNAalifold options inputFilePath outputFilePath = system ("RNAalifold " ++ options  ++ " < " ++ inputFilePath  ++ " > " ++ outputFilePath)+systemRNAalifold options inputFilePath outputFilePath = system ("RNAalifold " ++ options  ++ " " ++ inputFilePath  ++ " > " ++ outputFilePath)  -- | Parse the consenus of RNAz results          genParserRNAalifold :: GenParser Char st RNAalifold