diff --git a/ViennaRNAParser.cabal b/ViennaRNAParser.cabal
--- a/ViennaRNAParser.cabal
+++ b/ViennaRNAParser.cabal
@@ -5,13 +5,13 @@
-- PVP summary: +-+------- breaking API changes
-- | | +----- non-breaking API additions
-- | | | +--- code changes with no API change
-version: 1.3.1
+version: 1.3.2
synopsis: Libary for parsing ViennaRNA package output
description: Currently contains parsers and datatypes for: RNAalifold, RNAcode, RNAdistance, RNAcofold, RNAfold, RNAplex, RNAup, RNAz.
.
For more information on the ViennaRNA package refer to .
.
- The libary is tested with Version 2.2.4 of the ViennaRNA package.
+ The libary is tested with Version 2.3.2 of the ViennaRNA package.
license: GPL
license-file: LICENSE
author: Florian Eggenhofer
@@ -30,8 +30,8 @@
source-repository this
type: git
- location: https://github.com/eggzilla/ViennaRNAParser/tree/1.3.1
- tag: 1.3.1
+ location: https://github.com/eggzilla/ViennaRNAParser/tree/1.3.2
+ tag: 1.3.2
library
-- Modules exported by the library.
diff --git a/changelog b/changelog
--- a/changelog
+++ b/changelog
@@ -1,4 +1,6 @@
-*-change-log-*-
+1.3.2 Florian Eggenhofer 20. January 2017
+ * Fix for RNAalifold systemcall function
1.3.1 Florian Eggenhofer 23. October 2016
* Improvements to RNAcode parser,
* Improvements to travis testing
diff --git a/src/Bio/RNAalifoldParser.hs b/src/Bio/RNAalifoldParser.hs
--- a/src/Bio/RNAalifoldParser.hs
+++ b/src/Bio/RNAalifoldParser.hs
@@ -17,7 +17,7 @@
--- | Run external RNAalifold command and read the output into the corresponding datatype
systemRNAalifold :: String -> String -> String -> IO ExitCode
-systemRNAalifold options inputFilePath outputFilePath = system ("RNAalifold " ++ options ++ " < " ++ inputFilePath ++ " > " ++ outputFilePath)
+systemRNAalifold options inputFilePath outputFilePath = system ("RNAalifold " ++ options ++ " " ++ inputFilePath ++ " > " ++ outputFilePath)
-- | Parse the consenus of RNAz results
genParserRNAalifold :: GenParser Char st RNAalifold