CMCompare 0.0.1.1 → 0.0.1.2

raw patch · 2 files changed

+5/−6 lines, 2 filesdep −BiobaseInfernaldep ~Biobasedep ~cmdargs

Dependencies removed: BiobaseInfernal

Dependency ranges changed: Biobase, cmdargs

Files

• CMCompare.cabal +3/−4
• CMCompare.hs +2/−2

@@ -1,5 +1,5 @@ name:           CMCompare-version:        0.0.1.1+version:        0.0.1.2 author:         Christian Hoener zu Siederdissen, Ivo L. Hofacker maintainer:     choener@tbi.univie.ac.at copyright:      Christian Hoener zu Siederdissen, Ivo L. Hofacker, 2010@@ -25,11 +25,10 @@ executable hsCMCompare   build-depends:     base >= 4 && < 5,-    cmdargs == 0.3,+    cmdargs == 0.6.4,     array, -    Biobase >= 0.0.2 && < 0.0.3,-    BiobaseInfernal >= 0.0.2 && < 0.0.3,+    Biobase >= 0.1.0 && < 0.2.0,     HsTools >= 0.0.1.1 && < 0.0.2    main-is:

@@ -378,8 +378,8 @@   , pend        = 0.05  &= help "aggregate local end probability"   , endmarker   = False &= help "add an endmarker into the rnastring to denote local ends"   , nobeginilir = False &= help "trailing left or right nucleotides change the score"-  , models      = def   &= args &= help "path to exactly two covariance models"-  } &= summary "CMCompare: Discriminatory Power of RNA Family Models\n(c) 2010, Christian Hoener zu Siederdissen and Ivo Hofacker\nchoener@tbi.univie.ac.at\nLicensed under the GPLv3\n"+  , models      = def   &= args -- &= help "path to exactly two covariance models"+  } &= summary "CMCompare: Discriminatory Power of RNA Family Models" &= help "(c) 2010, Christian Hoener zu Siederdissen and Ivo Hofacker\nchoener@tbi.univie.ac.at\nLicensed under the GPLv3\n" &= verbosity -- TODO put fixTransition in BiobaseInfernal, rename and whatnot  -- | what is this? this sets the transition score in the root to 0 for the