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BiobaseTurner 0.1.0.0 → 0.1.1.0

raw patch · 2 files changed

+13/−5 lines, 2 filesPVP ok

version bump matches the API change (PVP)

API changes (from Hackage documentation)

Files

Biobase/Turner/Import.hs view
@@ -97,7 +97,7 @@     , bulgeSingleC  = L.head $ imisc' !! 13     , iloop1x1      = fromAssocs minPPBB   maxPPBB   infE $ L.zip keysPPBB   iloop1x1'     , iloop2x1      = fromAssocs minPPBBB  maxPPBBB  infE $ L.zip keysPPBBB  iloop2x1'-    , iloop2x2      = fromAssocs minPPBBBB maxPPBBBB infE $ L.zip keysPPBBBB iloop2x2'+    , iloop2x2      = fromAssocs minPPBBBB maxPPBBBB infE $ L.zip (if (prefix == "" || suffix == "dh") then keysPPBBBBrna else keysPPBBBBdna) iloop2x2'     , iloopMM       = fromAssocs minPBB    maxPBB    infE $ L.zip keysPBB    iloopMM'     , iloop2x3MM    = fromAssocs minPBB    maxPBB    infE $ L.zip keysPBB    iloop2x3MM'     , iloop1xnMM    = fromAssocs minPBB    maxPBB    infE $ L.zip keysPBB    iloop1xnMM'@@ -142,11 +142,14 @@              | (k1,k2) <- plist11, k5 <- acgu, (k3,k4) <- plist11, k6 <- acgu] keysPPBBB  = [ ((k1,k2),(k4,k3),(k5,k6,k7))              | (k1,k2) <- plist11, k6 <- acgu, k5 <- acgu, (k3,k4) <- plist11, k7 <- acgu]-keysPPBBBB = [ ((k1,k2),(k4,k3),(k5,k6,k7,k8))-             | (k1,k2) <- plist22, (k3,k4) <- plist22, k5 <- acgu, k8 <- acgu, k6 <- acgu, k7 <- acgu]+keysPPBBBBrna = [ ((k1,k2),(k4,k3),(k5,k6,k7,k8))+                | (k1,k2) <- plist22rna, (k3,k4) <- plist22rna, k5 <- acgu, k8 <- acgu, k6 <- acgu, k7 <- acgu]+keysPPBBBBdna = [ ((k1,k2),(k4,k3),(k5,k6,k7,k8))+                | (k1,k2) <- plist22dna, (k3,k4) <- plist22dna, k5 <- acgu, k8 <- acgu, k6 <- acgu, k7 <- acgu]  plist11 = [(nA,nU),(nC,nG),(nG,nC),(nU,nA),(nG,nU),(nU,nG)]-plist22 = [(nA,nU),(nC,nG),(nG,nC),(nG,nU),(nU,nA),(nU,nG)]+plist22rna = [(nA,nU),(nC,nG),(nG,nC),(nG,nU),(nU,nA),(nU,nG)]+plist22dna = [(nA,nT),(nC,nG),(nG,nC),(nT,nA),(nG,nT),(nT,nG)]  infE = 999999 :: Double
BiobaseTurner.cabal view
@@ -1,5 +1,5 @@ name:           BiobaseTurner-version:        0.1.0.0+version:        0.1.1.0 author:         Christian Hoener zu Siederdissen maintainer:     choener@tbi.univie.ac.at homepage:       http://www.tbi.univie.ac.at/~choener/@@ -21,6 +21,11 @@                 .                 This is the 2011 post-library split version, hence not                 deprecated anymore.+                .+                NOTE This is rather fragile as some files use different index+                enumerations, which we handle rather... simplistically. We+                cannot fix one asymmetry case in dnastack.dh, as we do not+                change sources.  library   build-depends: