Cabal revisions of hPDB-examples-1.5.0.0
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-name: hPDB-examples-version: 1.5.0.0-synopsis: Examples for hPDB library-stability: stable-homepage: https://github.com/BioHaskell/hPDB-examples-package-url: http://hackage.haskell.org/package/hPDB-description: Examples for handling Protein Data Bank file format.-category: Bioinformatics -license: BSD3-license-file: LICENSE--author: Michal J. Gajda-copyright: Copyright by Michal J. Gajda '2009-'2013-maintainer: mjgajda@googlemail.com-bug-reports: mailto:mjgajda@googlemail.com--build-type: Simple-cabal-version: >=1.8-tested-with: GHC==7.10.3,GHC==8.0.1,GHC==8.2.2---data-files: 1CRN.pdb, 1HTQ.pdb, 3JYV.pdb-extra-source-files: README.md INSTALL AUTHORS--source-repository head- type: git- location: https://github.com/BioHaskell/hPDB-examples.git--Executable PDB2Fasta- main-is: examples/PDB2Fasta.hs- ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N- build-depends: base>=4.0, base <4.12, bytestring, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq, QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, iterable >=3.0- other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash--Executable ShiftToCenter- main-is: examples/ShiftToCenter.hs- ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N- build-depends: base>=4.0, base<4.12, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, bytestring, iterable >=1.0- other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash--Executable CleanPDB- main-is: examples/CleanPDB.hs- ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N- build-depends: base>=4.0, base <4.12, bytestring, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, iterable >=1.0- other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash--Executable SplitModels- main-is: examples/SplitModels.hs- ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N- build-depends: base>=4.0, base <4.12, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, bytestring, iterable >=1.0- other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash--Executable CanonicalAxes- main-is: examples/CanonicalAxes.hs- ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N- Build-depends: base>=4.0, base <4.12, bytestring, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, iterable >=1.0- other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash--Executable PrintEvents- Main-is: tests/PrintEvents.hs- ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N- Build-depends: base>=4.0, base <4.12, bytestring, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq, QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, iterable >=1.0- other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls--Executable PrintStructureObject- ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N- Build-depends: base>=4.0, base <4.12, bytestring, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, iterable >=1.0- Main-is: tests/PrintStructureObject.hs- other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls--Executable Rg- main-is: examples/Rg.hs- ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N- -fsimpl-tick-factor=150- -- ^ To avoid difficulties with GHC 7.10.1:- -- https://ghc.haskell.org/trac/ghc/ticket/10565- Build-depends: base>=4.0, base <4.12, ghc-prim, bytestring, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, iterable >=1.0- other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls--Executable StericClashCheck- main-is: examples/StericClashCheck.hs- ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N- Build-Depends: base>=4.0, base<4.12, bytestring, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq, Octree >= 0.5, QuickCheck, text, hPDB >= 1.5, iterable >=1.0- other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls---- if flag(haveOpenGL) -- why can't we make it conditionally available?-Executable Viewer- main-is: examples/Viewer.hs- ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N- Build-depends: base>=4.0, base <4.12, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, OpenGL, GLUT, hPDB >= 1.5, bytestring, iterable >=1.0- other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash--test-suite ParserPerformance- main-is: tests/TestParser.hs- type: exitcode-stdio-1.0- ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts "-with-rtsopts=-N -t"- Build-depends: base>=4.0, base <4.12, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq, text>=0.11.1.13, hPDB >= 1.5, bytestring, iterable >=1.0, IfElse >= 0.80, process >= 1.0, time >= 1.2- other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash-+name: hPDB-examples +version: 1.5.0.0 +x-revision: 1 +synopsis: Examples for hPDB library +stability: stable +homepage: https://github.com/BioHaskell/hPDB-examples +package-url: http://hackage.haskell.org/package/hPDB +description: Examples for handling Protein Data Bank file format. +category: Bioinformatics +license: BSD3 +license-file: LICENSE + +author: Michal J. Gajda +copyright: Copyright by Michal J. Gajda '2009-'2013 +maintainer: mjgajda@googlemail.com +bug-reports: mailto:mjgajda@googlemail.com + +build-type: Simple +cabal-version: >=1.8 +tested-with: GHC==7.10.3,GHC==8.0.1,GHC==8.2.2 +--data-files: 1CRN.pdb, 1HTQ.pdb, 3JYV.pdb +extra-source-files: README.md INSTALL AUTHORS + +source-repository head + type: git + location: https://github.com/BioHaskell/hPDB-examples.git + +Executable PDB2Fasta + main-is: examples/PDB2Fasta.hs + ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N + build-depends: base>=4.0, base <4.12, bytestring, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq, QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, iterable >=3.0 + other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash + +Executable ShiftToCenter + main-is: examples/ShiftToCenter.hs + ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N + build-depends: base>=4.0, base<4.12, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, bytestring, iterable >=1.0 + other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash + +Executable CleanPDB + main-is: examples/CleanPDB.hs + ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N + build-depends: base>=4.0, base <4.12, bytestring, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, iterable >=1.0 + other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash + +Executable SplitModels + main-is: examples/SplitModels.hs + ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N + build-depends: base>=4.0, base <4.12, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, bytestring, iterable >=1.0 + other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash + +Executable CanonicalAxes + main-is: examples/CanonicalAxes.hs + ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N + Build-depends: base>=4.0, base <4.12, bytestring, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, iterable >=1.0 + other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash + +Executable PrintEvents + Main-is: tests/PrintEvents.hs + ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N + Build-depends: base>=4.0, base <4.12, bytestring, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq, QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, iterable >=1.0 + other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls + +Executable PrintStructureObject + ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N + Build-depends: base>=4.0, base <4.12, bytestring, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, iterable >=1.0 + Main-is: tests/PrintStructureObject.hs + other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls + +Executable Rg + main-is: examples/Rg.hs + ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N + -fsimpl-tick-factor=150 + -- ^ To avoid difficulties with GHC 7.10.1: + -- https://ghc.haskell.org/trac/ghc/ticket/10565 + Build-depends: base>=4.0, base <4.12, ghc-prim, bytestring, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, iterable >=1.0 + other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls + +Executable StericClashCheck + main-is: examples/StericClashCheck.hs + ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N + Build-Depends: base>=4.0, base<4.12, bytestring, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq, Octree >= 0.6.0.1, QuickCheck, text, hPDB >= 1.5, iterable >=1.0 + other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls + +-- if flag(haveOpenGL) -- why can't we make it conditionally available? +Executable Viewer + main-is: examples/Viewer.hs + ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N + Build-depends: base>=4.0, base <4.12, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, OpenGL, GLUT, hPDB >= 1.5, bytestring, iterable >=1.0 + other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash + +test-suite ParserPerformance + main-is: tests/TestParser.hs + type: exitcode-stdio-1.0 + ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts "-with-rtsopts=-N -t" + Build-depends: base>=4.0, base <4.12, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq, text>=0.11.1.13, hPDB >= 1.5, bytestring, iterable >=1.0, IfElse >= 0.80, process >= 1.0, time >= 1.2 + other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash +