Cabal revisions of BiobaseNewick-0.0.0.2
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-Name: BiobaseNewick-Version: 0.0.0.2-License: BSD3-License-file: LICENSE-Author: Christian Hoener zu Siederdissen-Maintainer: choener@bioinf.uni-leipzig.de-Copyright: Christian Hoener zu Siederdissen, 2015-2017-Homepage: https://github.com/choener/BiobaseNewick-bug-reports: https://github.com/choener/BiobaseNewick/issues-Stability: Experimental-Category: Bioinformatics-Build-type: Simple-Cabal-version: >= 1.10-tested-with: GHC == 7.10.3, GHC == 8.0.1, GHC == 8.0.2-Synopsis: Newick file format parser.-Description:- This is a simple parser for Newick trees. The parser returns a- rose tree. Each node is labelled with the node name (or an- empty string for anonymous nodes) and a distance (0 if not- given).- .- Includes conversion to an efficient static forest.----extra-source-files:- changelog.md- README.md----library- exposed-modules:- Biobase.Newick- Biobase.Newick.Export- Biobase.Newick.Import- Biobase.Newick.StaticForest- Biobase.Newick.Types-- build-depends: base >= 4.7 && < 5.0- , aeson >= 0.8- , attoparsec >= 0.12- , binary >= 0.7- , cereal >= 0.4- , cereal-text >= 0.1.0- , containers >= 0.5- , fgl >= 5.5- , QuickCheck >= 2.7- , text >= 1.2- , text-binary >= 0.1.0- , vector >= 0.10- --- , ForestStructures == 0.0.0.*- ghc-options:- -O2- -funbox-strict-fields- default-language:- Haskell2010- default-extensions: DeriveGeneric- , DataKinds- , OverloadedStrings------ simple testing program that displays static forest structures from newick trees--executable TestForestStructure- build-depends: base- , cmdargs >= 0.10- , text- , vector- --- , BiobaseNewick- , ForestStructures- hs-source-dirs:- src- main-is:- TestForestStructure.hs- default-language:- Haskell2010- default-extensions: BangPatterns- , DataKinds- , DeriveDataTypeable- , RecordWildCards- , ScopedTypeVariables- ghc-options:- -O2----test-suite properties- type:- exitcode-stdio-1.0- main-is:- properties.hs- ghc-options:- -threaded -rtsopts -with-rtsopts=-N- hs-source-dirs:- tests- default-language:- Haskell2010- default-extensions: ScopedTypeVariables- , TemplateHaskell- build-depends: base- , aeson- , binary- , BiobaseNewick- , cereal- , QuickCheck- , test-framework >= 0.8- , test-framework-quickcheck2 >= 0.3- , test-framework-th >= 0.2----source-repository head- type: git- location: git://github.com/choener/BiobaseNewick-+Name: BiobaseNewick +Version: 0.0.0.2 +x-revision: 1 +License: BSD3 +License-file: LICENSE +Author: Christian Hoener zu Siederdissen +Maintainer: choener@bioinf.uni-leipzig.de +Copyright: Christian Hoener zu Siederdissen, 2015-2017 +Homepage: https://github.com/choener/BiobaseNewick +bug-reports: https://github.com/choener/BiobaseNewick/issues +Stability: Experimental +Category: Bioinformatics +Build-type: Simple +Cabal-version: >= 1.10 +tested-with: GHC == 7.10.3, GHC == 8.0.1, GHC == 8.0.2 +Synopsis: Newick file format parser. +Description: + This is a simple parser for Newick trees. The parser returns a + rose tree. Each node is labelled with the node name (or an + empty string for anonymous nodes) and a distance (0 if not + given). + . + Includes conversion to an efficient static forest. + + + +extra-source-files: + changelog.md + README.md + + + +library + exposed-modules: + Biobase.Newick + Biobase.Newick.Export + Biobase.Newick.Import + Biobase.Newick.StaticForest + Biobase.Newick.Types + + build-depends: base >= 4.7 && < 5.0 + , aeson >= 0.8 + , attoparsec >= 0.12 + , binary >= 0.7 + , cereal >= 0.4 + , cereal-text >= 0.1.0 + , containers >= 0.5 + , fgl >= 5.5 + , QuickCheck >= 2.7 + , text >= 1.2 + , text-binary >= 0.1.0 + , vector >= 0.10 + -- + , ForestStructures >=0.0.0 && <0.0.2 + ghc-options: + -O2 + -funbox-strict-fields + default-language: + Haskell2010 + default-extensions: DeriveGeneric + , DataKinds + , OverloadedStrings + + + +-- simple testing program that displays static forest structures from newick trees + +executable TestForestStructure + build-depends: base + , cmdargs >= 0.10 + , text + , vector + -- + , BiobaseNewick + , ForestStructures + hs-source-dirs: + src + main-is: + TestForestStructure.hs + default-language: + Haskell2010 + default-extensions: BangPatterns + , DataKinds + , DeriveDataTypeable + , RecordWildCards + , ScopedTypeVariables + ghc-options: + -O2 + + + +test-suite properties + type: + exitcode-stdio-1.0 + main-is: + properties.hs + ghc-options: + -threaded -rtsopts -with-rtsopts=-N + hs-source-dirs: + tests + default-language: + Haskell2010 + default-extensions: ScopedTypeVariables + , TemplateHaskell + build-depends: base + , aeson + , binary + , BiobaseNewick + , cereal + , QuickCheck + , test-framework >= 0.8 + , test-framework-quickcheck2 >= 0.3 + , test-framework-th >= 0.2 + + + +source-repository head + type: git + location: git://github.com/choener/BiobaseNewick +