Cabal revisions of AlignmentAlgorithms-0.0.1.0
Hackage metadata revisions edit the .cabal file after upload; each diff below is one revision.
revision 1
-name: AlignmentAlgorithms-version: 0.0.1.0-author: Christian Hoener zu Siederdissen, 2013-2015-copyright: Christian Hoener zu Siederdissen, 2013-2015-homepage: http://www.bioinf.uni-leipzig.de/Software/gADP/-maintainer: choener@bioinf.uni-leipzig.de-category: Algorithms, Data Structures, Bioinformatics, Linguistics-license: GPL-3-license-file: LICENSE-build-type: Simple-stability: experimental-cabal-version: >= 1.10.0-tested-with: GHC == 7.8.4, GHC == 7.10.1-synopsis: Collection of alignment algorithms-description:- A selection of (sequence) alignment algorithms. Both terminal,- and syntactic variables, as well as the index type is not fixed- here. This makes it possible to select the correct structure of- the grammar here, but bind the required data type for alignment- in user code.- .- <https://github.com/choener/AlignmentAlgorithms/README.md>- .- That being said, these algorithms are mostly aimed towards- sequence alignment problems.- .- * global alignment (Needleman-Wunsch style)- .- .- .- @- Christian Hoener zu Siederdissen- Sneaking Around ConcatMap: Efficient Combinators for Dynamic Programming- 2012. Proceedings of the 17th ACM SIGPLAN international conference on Functional programming- <http://doi.acm.org/10.1145/2364527.2364559> preprint: <http://www.tbi.univie.ac.at/newpapers/pdfs/TBI-p-2012-2.pdf>- @- .- @- Andrew Farmer, Christian Höner zu Siederdissen, and Andy Gill.- The HERMIT in the stream: fusing stream fusion’s concatMap.- 2014. Proceedings of the ACM SIGPLAN 2014 workshop on Partial evaluation and program manipulation.- <http://dl.acm.org/citation.cfm?doid=2543728.2543736>- @- .- @- Christian Höner zu Siederdissen, Ivo L. Hofacker, and Peter F. Stadler.- Product Grammars for Alignment and Folding.- 2014. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 99.- <http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6819790>- @- .- @- Christian Höner zu Siederdissen, Sonja J. Prohaska, and Peter F. Stadler.- Algebraic Dynamic Programming over General Data Structures.- 2015. submitted.- @- .----Extra-Source-Files:- README.md- changelog.md----library- build-depends: base >= 4.7 && < 4.9- , ADPfusion == 0.4.0.*- , containers == 0.5.*- , fmlist >= 0.9 && < 0.10- , FormalGrammars == 0.2.0.*- , GrammarProducts == 0.1.0.*- , PrimitiveArray == 0.6.0.*- , vector == 0.10.*- exposed-modules:- DP.Alignment.Global.Tapes2- default-language:- Haskell2010- default-extensions: BangPatterns- , FlexibleContexts- , FlexibleInstances- , MultiParamTypeClasses- , QuasiQuotes- , TemplateHaskell- , TypeFamilies- ghc-options:- -O2 -funbox-strict-fields--source-repository head- type: git- location: git://github.com/choener/AlignmentAlgorithms-+name: AlignmentAlgorithms +version: 0.0.1.0 +x-revision: 1 +author: Christian Hoener zu Siederdissen, 2013-2015 +copyright: Christian Hoener zu Siederdissen, 2013-2015 +homepage: http://www.bioinf.uni-leipzig.de/Software/gADP/ +maintainer: choener@bioinf.uni-leipzig.de +category: Algorithms, Data Structures, Bioinformatics, Linguistics +license: GPL-3 +license-file: LICENSE +build-type: Simple +stability: experimental +cabal-version: >= 1.10.0 +tested-with: GHC == 7.8.4, GHC == 7.10.1 +synopsis: Collection of alignment algorithms +description: + A selection of (sequence) alignment algorithms. Both terminal, + and syntactic variables, as well as the index type is not fixed + here. This makes it possible to select the correct structure of + the grammar here, but bind the required data type for alignment + in user code. + . + <https://github.com/choener/AlignmentAlgorithms/blob/master/README.md> + . + That being said, these algorithms are mostly aimed towards + sequence alignment problems. + . + * global alignment (Needleman-Wunsch style) + . + . + . + @ + Christian Hoener zu Siederdissen + Sneaking Around ConcatMap: Efficient Combinators for Dynamic Programming + 2012. Proceedings of the 17th ACM SIGPLAN international conference on Functional programming + <http://doi.acm.org/10.1145/2364527.2364559> preprint: <http://www.tbi.univie.ac.at/newpapers/pdfs/TBI-p-2012-2.pdf> + @ + . + @ + Andrew Farmer, Christian Höner zu Siederdissen, and Andy Gill. + The HERMIT in the stream: fusing stream fusion’s concatMap. + 2014. Proceedings of the ACM SIGPLAN 2014 workshop on Partial evaluation and program manipulation. + <http://dl.acm.org/citation.cfm?doid=2543728.2543736> + @ + . + @ + Christian Höner zu Siederdissen, Ivo L. Hofacker, and Peter F. Stadler. + Product Grammars for Alignment and Folding. + 2014. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 99. + <http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6819790> + @ + . + @ + Christian Höner zu Siederdissen, Sonja J. Prohaska, and Peter F. Stadler. + Algebraic Dynamic Programming over General Data Structures. + 2015. submitted. + @ + . + + + +Extra-Source-Files: + README.md + changelog.md + + + +library + build-depends: base >= 4.7 && < 4.9 + , ADPfusion == 0.4.0.* + , containers == 0.5.* + , fmlist >= 0.9 && < 0.10 + , FormalGrammars == 0.2.0.* + , GrammarProducts == 0.1.0.* + , PrimitiveArray == 0.6.0.* + , vector == 0.10.* + exposed-modules: + DP.Alignment.Global.Tapes2 + default-language: + Haskell2010 + default-extensions: BangPatterns + , FlexibleContexts + , FlexibleInstances + , MultiParamTypeClasses + , QuasiQuotes + , TemplateHaskell + , TypeFamilies + ghc-options: + -O2 -funbox-strict-fields + +source-repository head + type: git + location: git://github.com/choener/AlignmentAlgorithms +