varan-0.5.1: varan.cabal

Name:          varan
Version:       0.5.1
License:       GPL
Cabal-Version: >= 1.6
Build-Type:    Simple
Category:      Bioinformatics
Author:        Ketil Malde
Maintainer:    Ketil Malde <ketil@malde.org>
Synopsis:      Process mpileup output to identify significant differences
Description:   Post-processing output from `samtools mpileup` to extract various information, 
	       including statistics (per-position or global), consensus sequence (in various
	       formats), and textual visualizations.

Executable varan
    Hs-Source-Dirs:  src
    Main-Is:         Varan.hs
    Other-Modules:   AgrestiCoull, MPileup, RandomSelect, Variants, Metrics, Options, ParMap, Process, Count, ESIV
    Build-Depends:   base >= 4 && < 5, random, mtl, parallel, statistics, cmdargs, bytestring
    Ghc-Options:     -rtsopts -Wall -threaded

Executable vextr
    Hs-Source-Dirs:  src
    Main-Is:         VExtr.hs
    Other-Modules:   MPileup, Count
    Build-Depends:   base >= 4 && < 5, bytestring, cmdargs
    Ghc-Options:     -rtsopts -Wall -threaded -main-is VExtr

Executable sparks
    Hs-Source-Dirs:  src
    Main-Is:         Sparks.hs
    Other-Modules:   MPileup, Count
    Build-Depends:   base >= 4 && < 5, bytestring, cmdargs, ansi-terminal
    Ghc-Options:     -rtsopts -Wall -threaded