too-many-cells-3.0.1.0: too-many-cells.cabal
name: too-many-cells
version: 3.0.1.0
synopsis: Cluster single cells and analyze cell clade relationships.
description: Different methods to cluster and analyze single cell data with diversity indices and differential expression.
homepage: http://github.com/GregorySchwartz/too-many-cells#readme
license: GPL-3
license-file: LICENSE
author: Gregory W. Schwartz
maintainer: gregory.schwartz@uhnresearch.ca
copyright: 2022 Gregory W. Schwartz
category: Bioinformatics
build-type: Simple
-- extra-source-files:
cabal-version: >=1.10
library
hs-source-dirs: src
exposed-modules: TooManyCells.Classify.Classify
, TooManyCells.Classify.Types
, TooManyCells.Differential.Differential
, TooManyCells.Differential.Types
, TooManyCells.Diversity.Diversity
, TooManyCells.Diversity.Load
, TooManyCells.Diversity.Plot
, TooManyCells.Diversity.Types
, TooManyCells.File.Types
, TooManyCells.MakeTree.Adjacency
, TooManyCells.MakeTree.Clumpiness
, TooManyCells.MakeTree.Cluster
, TooManyCells.MakeTree.Load
, TooManyCells.MakeTree.Plot
, TooManyCells.MakeTree.Print
, TooManyCells.MakeTree.Types
, TooManyCells.MakeTree.Utility
, TooManyCells.Matrix.AtacSeq
, TooManyCells.Matrix.Load
, TooManyCells.Matrix.Preprocess
, TooManyCells.Matrix.Types
, TooManyCells.Matrix.Utility
, TooManyCells.Motifs.FindMotif
, TooManyCells.Motifs.Types
, TooManyCells.Paths.Distance
, TooManyCells.Paths.Plot
, TooManyCells.Paths.Types
, TooManyCells.Peaks.ClusterPeaks
, TooManyCells.Peaks.Types
, TooManyCells.Program.Classify
, TooManyCells.Program.Differential
, TooManyCells.Program.Diversity
, TooManyCells.Program.Interactive
, TooManyCells.Program.LoadMatrix
, TooManyCells.Program.MakeTree
, TooManyCells.Program.MatrixOutput
, TooManyCells.Program.Motifs
, TooManyCells.Program.Options
, TooManyCells.Program.Paths
, TooManyCells.Program.Peaks
, TooManyCells.Program.Spatial
, TooManyCells.Program.Utility
, TooManyCells.Spatial.AnnoSpat
, TooManyCells.Spatial.ProjectionPlot
, TooManyCells.Spatial.Relationships
, TooManyCells.Spatial.SummaryPlot
, TooManyCells.Spatial.Types
, TooManyCells.Spatial.Utility
build-depends: base >= 4.7 && < 5
, IntervalMap
, SVGFonts
, aeson
, async
, async-pool
, attoparsec
, birch-beer
, bytestring
, cassava
, colour
, containers
, deepseq
, diagrams
, diagrams-cairo
, diagrams-graphviz
, diagrams-lib
, differential
, directory
, diversity
, fgl
, filepath
, find-clumpiness
, foldl
, graphviz
, hashable
, hierarchical-clustering
, hierarchical-spectral-clustering
, hmatrix
, hmatrix-svdlibc
, hvega
, hvega-theme
, inline-r
, lens
, managed
, matrix-market-attoparsec
, modularity
, mtl
, mwc-random
, optparse-applicative
, palette
, parallel
, plots
, ploterific
, process
, resourcet
, safe
, scientific
, sparse-linear-algebra
, spectral-clustering >= 0.3.0.2
, split
, statistics
, stm
, streaming
, streaming-bytestring
, streaming-cassava
, streaming-commons
, streaming-utils
, streaming-with
, system-filepath
, temporary
, terminal-progress-bar
, text
, text-show
, transformers
, turtle >= 1.5.18
, unordered-containers
, vector
, vector-algorithms
, zlib
-- No specConstr due to memory limitations
ghc-options: -O2 -fno-spec-constr
default-language: Haskell2010
executable too-many-cells
hs-source-dirs: app
main-is: Main.hs
-- No specConstr due to memory limitations
ghc-options: -threaded -rtsopts -O2 -fno-spec-constr
build-depends: base
, too-many-cells
, optparse-applicative
default-language: Haskell2010
source-repository head
type: git
location: https://github.com/GregorySchwartz/too-many-cells