##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##samtoolsVersion=1.3+htslib-1.3
##samtoolsCommand=samtools mpileup -vI -f /projects1/Reference_Genomes/Human/hs37d5/hs37d5.fa -r 1:1-200000 12880A.bam 12881A.bam 12883A.bam 12884A.bam 12885A.bam
##reference=file:///projects1/Reference_Genomes/Human/hs37d5/hs37d5.fa
##contig=<ID=1,length=249250621>
##contig=<ID=2,length=243199373>
##contig=<ID=3,length=198022430>
##contig=<ID=4,length=191154276>
##contig=<ID=5,length=180915260>
##contig=<ID=hs37d5,length=35477943>
##ALT=<ID=*,Description="Represents allele(s) other than observed.">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##INFO=<ID=AF1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele frequency (assuming HWE)">
##INFO=<ID=DP4,Number=4,Type=Integer,Description="Number of high-quality ref-forward , ref-reverse, alt-forward and alt-reverse bases">
##bcftools_callVersion=1.3+htslib-1.3
##bcftools_callCommand=call -c -v
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT 12880A 12881A 12883A 12884A 12885A
1 10492 testId C T 15.0302 . DP=28;PV4=1,1,0.30985,1 GT:PL 0/0:0,3,37 0/0:0,6,67 0/1:51,0,28 0/0:0,54,255 0/0:0,9,83
1 14907 . A G 146.092 . DP=55.526787;AC1=5;DP4=19,16,8,12;PV4=0.403198,0.000983733,1,0.0348559 GT:PL 0/1:0,0,0 0/0:0,9,42 0/1:51,0,0 0/1:70,0,123 1/1:68,5,0
1 14930 . A G 999 . DP=61.545999;AC1=6;;FQ=999;PV4=0.602167,0.240103,1,1 GT:PL 0/1:0,3,20 0/1:22,0,47 0/1:70,0,26 0/1:188,0,121 1/1:80,12,0
2 14933 . G A 51.2451 . DP=60.215796;PV4=0.49427,1,1,1 GT:PL 0/0:0,6,39 0/1:25,0,48 0/0:0,18,118 0/1:69,0,163 0/0:0,12,80
2 16495 . G C 7.29715 . DP=47.27107;AC1=2;PV4=0.540781,0.244272,1,0.0352549 GT:PL 0/0:0,9,9 0/1:23,3,0 0/0:0,4,9 0/1:27,0,46 0/0:0,9,21
2 20144 . G A 15.7039 . DP=121;AC1=3;PV4=1,1,1,1 GT:PL 0/0:0,5,81 0/1:33,0,47 0/1:9,0,21 0/0:0,182,122 0/1:18,0,27
2 30923 . G . 110.112 . DP=5;FQ=-28.9619 GT:PL 1/1:0,0,0 1/1:0,0,0 1/1:40,6,0 1/1:105,9,0 1/1:0,0,0