Bayes.hs

module Data.MonadicStreamFunction.Bayes where

-- base
import Control.Arrow
import Data.Functor (($>))
import Data.Tuple (swap)

-- transformers

-- log-domain
import Numeric.Log hiding (sum)

-- monad-bayes
import Control.Monad.Bayes.Population

-- dunai
import Data.MonadicStreamFunction
import Data.MonadicStreamFunction.InternalCore (MSF (..))

-- | Run the Sequential Monte Carlo algorithm continuously on an 'MSF'
runPopulationS ::
  forall m a b.
  Monad m =>
  -- | Number of particles
  Int ->
  -- | Resampler
  (forall x. Population m x -> Population m x) ->
  MSF (Population m) a b ->
  -- FIXME Why not MSF m a (Population b)
  MSF m a [(b, Log Double)]
runPopulationS nParticles resampler = runPopulationsS resampler . (spawn nParticles $>)

-- | Run the Sequential Monte Carlo algorithm continuously on a 'Population' of 'MSF's
runPopulationsS ::
  Monad m =>
  -- | Resampler
  (forall x. Population m x -> Population m x) ->
  Population m (MSF (Population m) a b) ->
  MSF m a [(b, Log Double)]
runPopulationsS resampler = go
 where
  go msfs = MSF $ \a -> do
    -- TODO This is quite different than the dunai version now. Maybe it's right nevertheless.
    -- FIXME This normalizes, which introduces bias, whatever that means
    bAndMSFs <- runPopulation $ normalize $ resampler $ flip unMSF a =<< msfs
    return $
      second (go . fromWeightedList . return) $
        unzip $
          (swap . fmap fst &&& swap . fmap snd) . swap <$> bAndMSFs

-- FIXME see PR re-adding this to monad-bayes
normalize :: Monad m => Population m a -> Population m a
normalize = fromWeightedList . fmap (\particles -> second (/ (sum $ snd <$> particles)) <$> particles) . runPopulation