monad-bayes-1.0.0: src/Control/Monad/Bayes/Traced/Static.hs
{-# LANGUAGE RankNTypes #-}
{-# LANGUAGE RecordWildCards #-}
-- |
-- Module : Control.Monad.Bayes.Traced.Static
-- Description : Distributions on execution traces of full programs
-- Copyright : (c) Adam Scibior, 2015-2020
-- License : MIT
-- Maintainer : leonhard.markert@tweag.io
-- Stability : experimental
-- Portability : GHC
module Control.Monad.Bayes.Traced.Static
( Traced (..),
hoist,
marginal,
mhStep,
mh,
)
where
import Control.Applicative (liftA2)
import Control.Monad.Bayes.Class
( MonadCond (..),
MonadInfer,
MonadSample (random),
)
import Control.Monad.Bayes.Density.Free (Density)
import Control.Monad.Bayes.Traced.Common
( Trace (..),
bind,
mhTransFree,
scored,
singleton,
)
import Control.Monad.Bayes.Weighted (Weighted)
import Control.Monad.Trans (MonadTrans (..))
import Data.List.NonEmpty as NE (NonEmpty ((:|)), toList)
-- | A tracing monad where only a subset of random choices are traced.
--
-- The random choices that are not to be traced should be lifted from the
-- transformed monad.
data Traced m a = Traced
{ model :: Weighted (Density m) a,
traceDist :: m (Trace a)
}
instance Monad m => Functor (Traced m) where
fmap f (Traced m d) = Traced (fmap f m) (fmap (fmap f) d)
instance Monad m => Applicative (Traced m) where
pure x = Traced (pure x) (pure (pure x))
(Traced mf df) <*> (Traced mx dx) = Traced (mf <*> mx) (liftA2 (<*>) df dx)
instance Monad m => Monad (Traced m) where
(Traced mx dx) >>= f = Traced my dy
where
my = mx >>= model . f
dy = dx `bind` (traceDist . f)
instance MonadTrans Traced where
lift m = Traced (lift $ lift m) (fmap pure m)
instance MonadSample m => MonadSample (Traced m) where
random = Traced random (fmap singleton random)
instance MonadCond m => MonadCond (Traced m) where
score w = Traced (score w) (score w >> pure (scored w))
instance MonadInfer m => MonadInfer (Traced m)
hoist :: (forall x. m x -> m x) -> Traced m a -> Traced m a
hoist f (Traced m d) = Traced m (f d)
-- | Discard the trace and supporting infrastructure.
marginal :: Monad m => Traced m a -> m a
marginal (Traced _ d) = fmap output d
-- | A single step of the Trace Metropolis-Hastings algorithm.
mhStep :: MonadSample m => Traced m a -> Traced m a
mhStep (Traced m d) = Traced m d'
where
d' = d >>= mhTransFree m
-- | Full run of the Trace Metropolis-Hastings algorithm with a specified
-- number of steps. Newest samples are at the head of the list.
mh :: MonadSample m => Int -> Traced m a -> m [a]
mh n (Traced m d) = fmap (map output . NE.toList) (f n)
where
f k
| k <= 0 = fmap (:| []) d
| otherwise = do
(x :| xs) <- f (k - 1)
y <- mhTransFree m x
return (y :| x : xs)