mcmc-0.6.2.4: src/Mcmc/Proposal/Slide.hs
{-# LANGUAGE RankNTypes #-}
-- |
-- Module : Mcmc.Proposal.Slide
-- Description : Additive proposals
-- Copyright : (c) Dominik Schrempf 2021
-- License : GPL-3.0-or-later
--
-- Maintainer : dominik.schrempf@gmail.com
-- Stability : unstable
-- Portability : portable
--
-- Creation date: Wed May 6 10:59:13 2020.
module Mcmc.Proposal.Slide
( slide,
slideSymmetric,
slideUniformSymmetric,
slideContrarily,
)
where
import Mcmc.Proposal
import Mcmc.Proposal.Generic
import Mcmc.Statistics.Types
import Statistics.Distribution.Normal
import Statistics.Distribution.Uniform
-- The actual proposal with tuning parameter.
slideSimple :: Mean Double -> StandardDeviation Double -> TuningParameter -> ProposalSimple Double
slideSimple m s t =
genericContinuous (normalDistr m (s * t)) (+) (Just negate) Nothing
-- | Additive proposal.
--
-- A normal distribution is used to sample the addend.
slide ::
Mean Double ->
StandardDeviation Double ->
PName ->
PWeight ->
Tune ->
Proposal Double
slide m s = createProposal description (slideSimple m s) PFast (PDimension 1)
where
description = PDescription $ "Slide; mean: " ++ show m ++ ", sd: " ++ show s
-- The actual proposal with tuning parameter.
slideSymmetricSimple :: StandardDeviation Double -> TuningParameter -> ProposalSimple Double
slideSymmetricSimple s t =
genericContinuous (normalDistr 0.0 (s * t)) (+) Nothing Nothing
-- | See 'slide'.
--
-- Use a normal distribution with mean zero. This proposal is fast, because the
-- Metropolis-Hastings-Green ratio does not include calculation of the forwards
-- and backwards kernels.
slideSymmetric ::
StandardDeviation Double ->
PName ->
PWeight ->
Tune ->
Proposal Double
slideSymmetric s = createProposal description (slideSymmetricSimple s) PFast (PDimension 1)
where
description = PDescription $ "Slide symmetric; sd: " ++ show s
-- The actual proposal with tuning parameter.
slideUniformSimple :: Size -> TuningParameter -> ProposalSimple Double
slideUniformSimple d t =
genericContinuous (uniformDistr (-t * d) (t * d)) (+) Nothing Nothing
-- | See 'slide'.
--
-- Use a uniformly distributed kernel with mean zero. This proposal is fast,
-- because the Metropolis-Hastings-Green ratio does not include calculation of
-- the forwards and backwards kernels.
slideUniformSymmetric ::
Size ->
PName ->
PWeight ->
Tune ->
Proposal Double
slideUniformSymmetric d = createProposal description (slideUniformSimple d) PFast (PDimension 1)
where
description = PDescription $ "Slide uniform symmetric; delta: " ++ show d
contra :: (Double, Double) -> Double -> (Double, Double)
contra (x, y) u = (x + u, y - u)
slideContrarilySimple ::
Mean Double ->
StandardDeviation Double ->
TuningParameter ->
ProposalSimple (Double, Double)
slideContrarilySimple m s t =
genericContinuous (normalDistr m (s * t)) contra (Just negate) Nothing
-- | See 'slide'.
--
-- Use a normally distributed kernel.
--
-- The two values are slid contrarily so that their sum stays constant. Contrary
-- proposals are useful when parameters are confounded.
slideContrarily ::
Mean Double ->
StandardDeviation Double ->
PName ->
PWeight ->
Tune ->
Proposal (Double, Double)
slideContrarily m s = createProposal description (slideContrarilySimple m s) PFast (PDimension 2)
where
description = PDescription $ "Slide contrarily; mean: " ++ show m ++ ", sd: " ++ show s