mcmc-0.6.1.0: mcmc.cabal

cabal-version:  2.2
name:           mcmc
version:        0.6.1.0
synopsis:       Sample from a posterior using Markov chain Monte Carlo
description:    Please see the README on GitHub at <https://github.com/dschrempf/mcmc#readme>
category:       Math, Statistics
homepage:       https://github.com/dschrempf/mcmc#readme
bug-reports:    https://github.com/dschrempf/mcmc/issues
author:         Dominik Schrempf
maintainer:     dominik.schrempf@gmail.com
copyright:      Dominik Schrempf (2021)
license:        GPL-3.0-or-later
build-type:     Simple

extra-source-files:
    README.md
    ChangeLog.md

source-repository head
  type: git
  location: https://github.com/dschrempf/mcmc

common lib
  ghc-options: -Wall -Wunused-packages
  default-language: Haskell2010

common test
  ghc-options: -Wall -Wunused-packages
  default-language: Haskell2010

common bench
  ghc-options: -Wall -Wunused-packages
  default-language: Haskell2010

common exec
  ghc-options: -Wall -Wunused-packages -threaded -rtsopts -with-rtsopts=-N
  default-language: Haskell2010

library
  import: lib
  exposed-modules:
      Mcmc
      Mcmc.Acceptance
      Mcmc.Algorithm
      Mcmc.Algorithm.MC3
      Mcmc.Algorithm.MHG
      Mcmc.Chain.Chain
      Mcmc.Chain.Link Mcmc.Chain.Save
      Mcmc.Chain.Trace
      Mcmc.Cycle
      Mcmc.Environment
      Mcmc.Internal.Gamma
      Mcmc.Likelihood
      Mcmc.Logger
      Mcmc.MarginalLikelihood
      Mcmc.Mcmc
      Mcmc.Monitor
      Mcmc.Monitor.Log
      Mcmc.Monitor.Parameter
      Mcmc.Monitor.ParameterBatch
      Mcmc.Monitor.Time
      Mcmc.Posterior
      Mcmc.Prior
      Mcmc.Proposal
      Mcmc.Proposal.Bactrian
      Mcmc.Proposal.Generic
      Mcmc.Proposal.Hamiltonian
      Mcmc.Proposal.Scale
      Mcmc.Proposal.Slide
      Mcmc.Proposal.Simplex
      Mcmc.Settings
      Mcmc.Statistics.Types
  other-modules:
      Mcmc.Internal.ByteString
      Mcmc.Internal.Random
      Mcmc.Internal.Shuffle
      Paths_mcmc
  autogen-modules:
      Paths_mcmc
  hs-source-dirs: src
  build-depends:
      aeson
    , base >=4.7 && <5
    , bytestring
    , circular
    , containers
    , covariance
    , data-default
    , deepseq
    , directory
    , dirichlet
    , double-conversion
    , hmatrix
    , log-domain
    , math-functions
    , microlens
    , mwc-random
    , monad-parallel
    , pretty-show
    , primitive
    , statistics
    , time
    , transformers
    , vector
    , zlib

test-suite mcmc-test
  import: test
  type: exitcode-stdio-1.0
  main-is: Spec.hs
  other-modules:
      Mcmc.ProposalSpec
      Mcmc.SaveSpec
      Paths_mcmc
  hs-source-dirs: test
  build-depends:
      base >=4.7 && <5
    , hspec
    , log-domain
    , mcmc
    , mwc-random
    , statistics

benchmark mcmc-bench
  import: bench
  type: exitcode-stdio-1.0
  main-is: Bench.hs
  other-modules:
      Normal
      Poisson
      Paths_mcmc
  autogen-modules:
      Paths_mcmc
  hs-source-dirs: bench
  build-depends:
      base >=4.7 && <5
    , criterion
    , mcmc
    , microlens
    , mwc-random