matrix-sized-0.0.1: spectra/Spectra/LinAlg/Arnoldi.h
// Copyright (C) 2018-2019 Yixuan Qiu <yixuan.qiu@cos.name>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obtain one at https://mozilla.org/MPL/2.0/.
#ifndef ARNOLDI_H
#define ARNOLDI_H
#include <Eigen/Core>
#include <cmath> // std::sqrt
#include <stdexcept> // std::invalid_argument
#include <sstream> // std::stringstream
#include "../MatOp/internal/ArnoldiOp.h"
#include "../Util/TypeTraits.h"
#include "../Util/SimpleRandom.h"
#include "UpperHessenbergQR.h"
#include "DoubleShiftQR.h"
namespace Spectra {
// Arnoldi factorization A * V = V * H + f * e'
// A: n x n
// V: n x k
// H: k x k
// f: n x 1
// e: [0, ..., 0, 1]
// V and H are allocated of dimension m, so the maximum value of k is m
template <typename Scalar, typename ArnoldiOpType>
class Arnoldi
{
private:
typedef Eigen::Index Index;
typedef Eigen::Matrix<Scalar, Eigen::Dynamic, Eigen::Dynamic> Matrix;
typedef Eigen::Matrix<Scalar, Eigen::Dynamic, 1> Vector;
typedef Eigen::Map<Matrix> MapMat;
typedef Eigen::Map<Vector> MapVec;
typedef Eigen::Map<const Matrix> MapConstMat;
typedef Eigen::Map<const Vector> MapConstVec;
protected:
ArnoldiOpType m_op; // Operators for the Arnoldi factorization
const Index m_n; // dimension of A
const Index m_m; // maximum dimension of subspace V
Index m_k; // current dimension of subspace V
Matrix m_fac_V; // V matrix in the Arnoldi factorization
Matrix m_fac_H; // H matrix in the Arnoldi factorization
Vector m_fac_f; // residual in the Arnoldi factorization
Scalar m_beta; // ||f||, B-norm of f
const Scalar m_near_0; // a very small value, but 1.0 / m_near_0 does not overflow
// ~= 1e-307 for the "double" type
const Scalar m_eps; // the machine precision, ~= 1e-16 for the "double" type
// Given orthonormal basis functions V, find a nonzero vector f such that V'Bf = 0
// Assume that f has been properly allocated
void expand_basis(MapConstMat& V, const Index seed, Vector& f, Scalar& fnorm)
{
using std::sqrt;
const Scalar thresh = m_eps * sqrt(Scalar(m_n));
Vector Vf(V.cols());
for(Index iter = 0; iter < 5; iter++)
{
// Randomly generate a new vector and orthogonalize it against V
SimpleRandom<Scalar> rng(seed + 123 * iter);
f.noalias() = rng.random_vec(m_n);
// f <- f - V * V'Bf, so that f is orthogonal to V in B-norm
m_op.trans_product(V, f, Vf);
f.noalias() -= V * Vf;
// fnorm <- ||f||
fnorm = m_op.norm(f);
// If fnorm is too close to zero, we try a new random vector,
// otherwise return the result
if(fnorm >= thresh)
return;
}
}
public:
Arnoldi(const ArnoldiOpType& op, Index m) :
m_op(op), m_n(op.rows()), m_m(m), m_k(0),
m_near_0(TypeTraits<Scalar>::min() * Scalar(10)),
m_eps(Eigen::NumTraits<Scalar>::epsilon())
{}
virtual ~Arnoldi() {}
// Const-reference to internal structures
const Matrix& matrix_V() const { return m_fac_V; }
const Matrix& matrix_H() const { return m_fac_H; }
const Vector& vector_f() const { return m_fac_f; }
Scalar f_norm() const { return m_beta; }
Index subspace_dim() const { return m_k; }
// Initialize with an operator and an initial vector
void init(MapConstVec& v0, Index& op_counter)
{
m_fac_V.resize(m_n, m_m);
m_fac_H.resize(m_m, m_m);
m_fac_f.resize(m_n);
m_fac_H.setZero();
// Verify the initial vector
const Scalar v0norm = m_op.norm(v0);
if(v0norm < m_near_0)
throw std::invalid_argument("initial residual vector cannot be zero");
// Points to the first column of V
MapVec v(m_fac_V.data(), m_n);
// Normalize
v.noalias() = v0 / v0norm;
// Compute H and f
Vector w(m_n);
m_op.perform_op(v.data(), w.data());
op_counter++;
m_fac_H(0, 0) = m_op.inner_product(v, w);
m_fac_f.noalias() = w - v * m_fac_H(0, 0);
// In some cases f is zero in exact arithmetics, but due to rounding errors
// it may contain tiny fluctuations. When this happens, we force f to be zero
if(m_fac_f.cwiseAbs().maxCoeff() < m_eps)
{
m_fac_f.setZero();
m_beta = Scalar(0);
} else {
m_beta = m_op.norm(m_fac_f);
}
// Indicate that this is a step-1 factorization
m_k = 1;
}
// Arnoldi factorization starting from step-k
virtual void factorize_from(Index from_k, Index to_m, Index& op_counter)
{
using std::sqrt;
if(to_m <= from_k) return;
if(from_k > m_k)
{
std::stringstream msg;
msg << "Arnoldi: from_k (= " << from_k <<
") is larger than the current subspace dimension (= " <<
m_k << ")";
throw std::invalid_argument(msg.str());
}
const Scalar beta_thresh = m_eps * sqrt(Scalar(m_n));
// Pre-allocate vectors
Vector Vf(to_m);
Vector w(m_n);
// Keep the upperleft k x k submatrix of H and set other elements to 0
m_fac_H.rightCols(m_m - from_k).setZero();
m_fac_H.block(from_k, 0, m_m - from_k, from_k).setZero();
for(Index i = from_k; i <= to_m - 1; i++)
{
bool restart = false;
// If beta = 0, then the next V is not full rank
// We need to generate a new residual vector that is orthogonal
// to the current V, which we call a restart
if(m_beta < m_near_0)
{
MapConstMat V(m_fac_V.data(), m_n, i); // The first i columns
expand_basis(V, 2 * i, m_fac_f, m_beta);
restart = true;
}
// v <- f / ||f||
m_fac_V.col(i).noalias() = m_fac_f / m_beta; // The (i+1)-th column
// Note that H[i+1, i] equals to the unrestarted beta
m_fac_H(i, i - 1) = restart ? Scalar(0) : m_beta;
// w <- A * v, v = m_fac_V.col(i)
m_op.perform_op(&m_fac_V(0, i), w.data());
op_counter++;
const Index i1 = i + 1;
// First i+1 columns of V
MapConstMat Vs(m_fac_V.data(), m_n, i1);
// h = m_fac_H(0:i, i)
MapVec h(&m_fac_H(0, i), i1);
// h <- V'Bw
m_op.trans_product(Vs, w, h);
// f <- w - V * h
m_fac_f.noalias() = w - Vs * h;
m_beta = m_op.norm(m_fac_f);
if(m_beta > Scalar(0.717) * m_op.norm(h))
continue;
// f/||f|| is going to be the next column of V, so we need to test
// whether V'B(f/||f||) ~= 0
m_op.trans_product(Vs, m_fac_f, Vf.head(i1));
Scalar ortho_err = Vf.head(i1).cwiseAbs().maxCoeff();
// If not, iteratively correct the residual
int count = 0;
while(count < 5 && ortho_err > m_eps * m_beta)
{
// There is an edge case: when beta=||f|| is close to zero, f mostly consists
// of noises of rounding errors, so the test [ortho_err < eps * beta] is very
// likely to fail. In particular, if beta=0, then the test is ensured to fail.
// Hence when this happens, we force f to be zero, and then restart in the
// next iteration.
if(m_beta < beta_thresh)
{
m_fac_f.setZero();
m_beta = Scalar(0);
break;
}
// f <- f - V * Vf
m_fac_f.noalias() -= Vs * Vf.head(i1);
// h <- h + Vf
h.noalias() += Vf.head(i1);
// beta <- ||f||
m_beta = m_op.norm(m_fac_f);
m_op.trans_product(Vs, m_fac_f, Vf.head(i1));
ortho_err = Vf.head(i1).cwiseAbs().maxCoeff();
count++;
}
}
// Indicate that this is a step-m factorization
m_k = to_m;
}
// Apply H -> Q'HQ, where Q is from a double shift QR decomposition
void compress_H(const DoubleShiftQR<Scalar>& decomp)
{
decomp.matrix_QtHQ(m_fac_H);
m_k -= 2;
}
// Apply H -> Q'HQ, where Q is from an upper Hessenberg QR decomposition
void compress_H(const UpperHessenbergQR<Scalar>& decomp)
{
decomp.matrix_QtHQ(m_fac_H);
m_k--;
}
// Apply V -> VQ and compute the new f.
// Should be called after compress_H(), since m_k is updated there.
// Only need to update the first k+1 columns of V
// The first (m - k + i) elements of the i-th column of Q are non-zero,
// and the rest are zero
void compress_V(const Matrix& Q)
{
Matrix Vs(m_n, m_k + 1);
for(Index i = 0; i < m_k; i++)
{
const Index nnz = m_m - m_k + i + 1;
MapConstVec q(&Q(0, i), nnz);
Vs.col(i).noalias() = m_fac_V.leftCols(nnz) * q;
}
Vs.col(m_k).noalias() = m_fac_V * Q.col(m_k);
m_fac_V.leftCols(m_k + 1).noalias() = Vs;
Vector fk = m_fac_f * Q(m_m - 1, m_k - 1) + m_fac_V.col(m_k) * m_fac_H(m_k, m_k - 1);
m_fac_f.swap(fk);
m_beta = m_op.norm(m_fac_f);
}
};
} // namespace Spectra
#endif // ARNOLDI_H