lapack-0.3: test/Test/BandedHermitian.hs
{-# LANGUAGE TypeFamilies #-}
{-# LANGUAGE FlexibleContexts #-}
{-# LANGUAGE UndecidableInstances #-}
{-# LANGUAGE ExistentialQuantification #-}
{-# LANGUAGE GADTs #-}
module Test.BandedHermitian (testsVar) where
import qualified Test.Divide as Divide
import qualified Test.Indexed as Indexed
import qualified Test.Generator as Gen
import qualified Test.Utility as Util
import Test.Banded.Utility
(Square(Square), genSquare, shapeBandedFromFull,
natFromProxy, offDiagonalNats)
import Test.Generator ((<-*#>), (<#*|>), (<-*|>), (<#*#>), (<#\#>))
import Test.Logic (Dim)
import Test.Utility
(approxReal, approxArray, approxRealVectorTol, approxMatrix,
approxVector,
genOrder, genArray, genVector, Tagged, equalListWith)
import qualified Numeric.LAPACK.Matrix.BandedHermitianPositiveDefinite
as BandedHermitianPD
import qualified Numeric.LAPACK.Matrix.BandedHermitian as BandedHermitian
import qualified Numeric.LAPACK.Matrix.Banded as Banded
import qualified Numeric.LAPACK.Matrix.Hermitian as Hermitian
import qualified Numeric.LAPACK.Matrix.Shape as MatrixShape
import qualified Numeric.LAPACK.Matrix.Extent as Extent
import qualified Numeric.LAPACK.Matrix.Square as Square
import qualified Numeric.LAPACK.Matrix.Array as ArrMatrix
import qualified Numeric.LAPACK.Matrix as Matrix
import qualified Numeric.LAPACK.Vector as Vector
import qualified Numeric.LAPACK.ShapeStatic as ShapeStatic
import Numeric.LAPACK.Matrix (ShapeInt, shapeInt, (#*#), (#*##), (-*#), (#*|))
import Numeric.LAPACK.Vector (Vector)
import Numeric.LAPACK.Scalar (RealOf, fromReal, absolute, selectReal)
import qualified Numeric.Netlib.Class as Class
import qualified Type.Data.Num.Unary.Proof as Proof
import qualified Type.Data.Num.Unary as Unary
import Type.Data.Num.Unary (unary)
import qualified Data.Array.Comfort.Storable as Array
import qualified Data.Array.Comfort.Shape as Shape
import Foreign.Storable (Storable)
import Control.Applicative (liftA2, (<$>))
import qualified Data.List.HT as ListHT
import Data.Tuple.HT (mapSnd)
import Data.Semigroup ((<>))
import qualified Test.QuickCheck as QC
data BandedHermitian size a =
forall offDiag.
(Unary.Natural offDiag) =>
BandedHermitian (BandedHermitian.BandedHermitian offDiag size a)
instance
(Show size, Show a, Shape.C size, Storable a) =>
Show (BandedHermitian size a) where
showsPrec p (BandedHermitian a) = showsPrec p a
shapeBandedHermitianFromSquare ::
(MatrixShape.UnaryProxy off) ->
MatrixShape.Square size -> MatrixShape.BandedHermitian off size
shapeBandedHermitianFromSquare k (MatrixShape.Full order extent) =
MatrixShape.BandedHermitian k order $ Extent.height extent
{-
Non-real elements on the diagonal.
-}
_genBandedHermitian ::
(Class.Floating a) => Gen.MatrixInt a (BandedHermitian ShapeInt a)
_genBandedHermitian =
flip Gen.mapGenDim Gen.squareShape $ \maxElem maxDim shape -> do
k <- QC.choose (0, toInteger maxDim)
Unary.reifyNatural k $ \numOff ->
fmap BandedHermitian $ genArray maxElem $
shapeBandedHermitianFromSquare (unary numOff) shape
genBandedHermitian ::
(Dim sh, Shape.Indexed sh, Shape.Index sh ~ ix, Eq ix,
Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
Gen.Square sh a (BandedHermitian sh a)
genBandedHermitian =
flip Gen.mapGenDim Gen.squareShape $ \maxElem maxDim sqShape -> do
k <- QC.choose (0, toInteger maxDim)
Unary.reifyNatural k $ \numOff -> do
let shape = shapeBandedHermitianFromSquare (unary numOff) sqShape
BandedHermitian <$>
(Util.genArrayIndexed shape $ \ix ->
let real =
case ix of
MatrixShape.InsideBox r c -> r==c
MatrixShape.VertOutsideBox _ _ -> False
MatrixShape.HorizOutsideBox _ _ -> False
in if real
then fromReal <$> Util.genReal maxElem
else Util.genElement maxElem)
convertToFull ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
BandedHermitian ShapeInt a -> Bool
convertToFull (BandedHermitian a) =
approxArray
(Hermitian.toSquare $ BandedHermitian.toHermitian a)
(Banded.toFull $ BandedHermitian.toBanded a)
takeDiagonal ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
BandedHermitian ShapeInt a -> Bool
takeDiagonal (BandedHermitian a) =
approxRealVectorTol 1e-5
(Hermitian.takeDiagonal $ BandedHermitian.toHermitian a)
(BandedHermitian.takeDiagonal a)
gramian ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
Square ShapeInt a -> Bool
gramian (Square a) =
let (sub,super) = offDiagonalNats a
in case (Proof.addNat sub super, Proof.addComm sub super) of
(Proof.Nat, Proof.AddComm) ->
approxArray
(BandedHermitian.toBanded $ BandedHermitian.gramian a)
(Banded.adjoint a #*# a)
type StaticVector1 n = Vector (ShapeStatic.ZeroBased (Unary.Succ n))
data SumRank1 size a =
forall offDiag.
(Unary.Natural offDiag) =>
SumRank1 size [(RealOf a, (Shape.Index size, StaticVector1 offDiag a))]
instance
(Show size, Show (Shape.Index size), Show a, Show (RealOf a),
Shape.C size, Storable a) =>
Show (SumRank1 size a) where
showsPrec p (SumRank1 sh a) = showsPrec p (sh,a)
genScaledVectors ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
Gen.VectorInt a (SumRank1 ShapeInt a)
genScaledVectors =
flip Gen.mapGen Gen.vectorDim $ \maxElem size@(Shape.ZeroBased n) -> do
k <- QC.choose (0, n-1)
Unary.reifyNatural (toInteger k) $ \numOff ->
fmap (SumRank1 size) $
if n==0
then return []
else
QC.listOf $
liftA2 (,) (Util.genReal maxElem) $
liftA2 (,) (QC.choose (0,n-k-1))
(genVector maxElem
(ShapeStatic.ZeroBased $ unary $ Unary.succ numOff))
sumRank1 ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
MatrixShape.Order -> SumRank1 ShapeInt a -> Bool
sumRank1 order (SumRank1 sh xs) =
approxArray
(BandedHermitian.toHermitian $ BandedHermitian.sumRank1 order sh xs)
(Hermitian.sumRank1 order sh $
map (mapSnd (uncurry $ displace sh)) xs)
displace ::
(Shape.C sh, Class.Floating a) =>
ShapeInt -> Int -> Vector sh a -> Vector ShapeInt a
displace (Shape.ZeroBased n) k a =
Array.mapShape (shapeInt . Shape.size) $
Vector.zero (shapeInt k)
`Vector.append`
a
`Vector.append`
Vector.zero (shapeInt $ max 0 $ n - k - Shape.size (Array.shape a))
multiplyIdentity ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
Hermitian.Transposition -> Matrix.General ShapeInt ShapeInt a -> Bool
multiplyIdentity trans m =
approxArray m
(BandedHermitian.multiplyFull trans
(BandedHermitian.identity (Matrix.height m)) m)
multiplyDiagonal ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
Hermitian.Transposition ->
(Vector ShapeInt ar, Matrix.General ShapeInt ShapeInt a) -> Bool
multiplyDiagonal trans (d,m) =
approxArray
(Matrix.scaleRowsReal d m)
(BandedHermitian.multiplyFull trans (BandedHermitian.diagonal d) m)
multiplyFullIdentity ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
BandedHermitian ShapeInt a -> Bool
multiplyFullIdentity (BandedHermitian m) =
let a = Banded.toFull $ BandedHermitian.toBanded m
in approxArray a $
BandedHermitian.multiplyFull BandedHermitian.NonTransposed m $
Square.identityFrom a
multiplyHermitianVector ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
Hermitian.Transposition ->
(BandedHermitian ShapeInt a, Vector ShapeInt a) ->
Bool
multiplyHermitianVector trans (BandedHermitian m, x) =
approxVector
(BandedHermitian.multiplyVector trans m x)
(Hermitian.multiplyVector trans (BandedHermitian.toHermitian m) x)
multiplyVectorDot ::
(Class.Floating a, Eq a) =>
(Vector ShapeInt a, BandedHermitian ShapeInt a, Vector ShapeInt a) -> Bool
multiplyVectorDot (x, BandedHermitian m, y) =
Vector.dot x (m#*|y) == Vector.dot (x-*#m) y
multiplyFullAny ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
Hermitian.Transposition ->
(BandedHermitian ShapeInt a,
Matrix.General ShapeInt ShapeInt a) ->
Bool
multiplyFullAny trans (BandedHermitian a, b) =
approxArray
(BandedHermitian.multiplyFull trans a b)
(Hermitian.multiplyFull trans (BandedHermitian.toHermitian a) b)
multiplyFullColumns ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
BandedHermitian.Transposition ->
(BandedHermitian ShapeInt a, Matrix.General ShapeInt ShapeInt a) -> Bool
multiplyFullColumns trans (BandedHermitian a, b) =
equalListWith approxVector
(Matrix.toColumns (BandedHermitian.multiplyFull trans a b))
(map (BandedHermitian.multiplyVector trans a) (Matrix.toColumns b))
multiplyFullAssoc ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
BandedHermitian.Transposition ->
(BandedHermitian ShapeInt a,
Matrix.General ShapeInt ShapeInt a,
Matrix.General ShapeInt ShapeInt a) ->
Bool
multiplyFullAssoc trans (BandedHermitian a, b, c) =
approxArray
(Matrix.multiply (BandedHermitian.multiplyFull trans a b) c)
(BandedHermitian.multiplyFull trans a (Matrix.multiply b c))
genBandedHPD ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
Gen.MatrixInt a (BandedHermitian ShapeInt a)
genBandedHPD = flip Gen.mapGenDim Gen.squareShape $ \maxElem maxDim shape -> do
kl <- QC.choose (0, toInteger maxDim)
ku <- QC.choose (0, toInteger maxDim)
Unary.reifyNatural kl $ \subU ->
Unary.reifyNatural ku $ \superU ->
let sub = unary subU; subP = natFromProxy sub
super = unary superU; superP = natFromProxy super
in case (Proof.addNat subP superP, Proof.addComm subP superP) of
(Proof.Nat, Proof.AddComm) ->
fmap (BandedHermitian . BandedHermitian.gramian) $
(genArray maxElem $ shapeBandedFromFull (sub, super) shape)
`QC.suchThat`
(\a -> absolute (Banded.determinant a) > 0.1)
determinant ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
BandedHermitian ShapeInt a -> Bool
determinant (BandedHermitian a) =
let detB = BandedHermitianPD.determinant a
detS = Hermitian.determinant $ BandedHermitian.toHermitian a
in approxReal (selectReal 1 1e-3 * max 1 (abs detB + abs detS)) detB detS
multiplySolve ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
(BandedHermitian ShapeInt a, Matrix.General ShapeInt ShapeInt a) -> Bool
multiplySolve (BandedHermitian a, b) =
approxMatrix (selectReal 10 1e-3) (a #*## BandedHermitianPD.solve a b) b
solveDecomposed ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
(BandedHermitian ShapeInt a, Matrix.General ShapeInt ShapeInt a) -> Bool
solveDecomposed (BandedHermitian a, b) =
approxMatrix (selectReal 1e-3 1e-7)
(BandedHermitianPD.solve a b)
(BandedHermitianPD.solveDecomposed (BandedHermitianPD.decompose a) b)
eigenvaluesDeterminant ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
BandedHermitian ShapeInt a -> Bool
eigenvaluesDeterminant (BandedHermitian a) =
let det = BandedHermitianPD.determinant a
prod = Vector.product $ BandedHermitian.eigenvalues a
in approxReal ((det+prod) * selectReal 0.5 1e-6) det prod
eigensystem ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
BandedHermitian ShapeInt a -> Bool
eigensystem (BandedHermitian a) =
let (q,d) = BandedHermitian.eigensystem a
in approxMatrix 1e-4
(Banded.toFull $ BandedHermitian.toBanded a)
(q <> Matrix.scaleRowsReal d (Square.adjoint q))
eigenvaluesHermitian ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
BandedHermitian ShapeInt a -> Bool
eigenvaluesHermitian (BandedHermitian a) =
approxRealVectorTol (selectReal 1e-3 1e-5)
(BandedHermitian.eigenvalues a)
(Hermitian.eigenvalues $ BandedHermitian.toHermitian a)
eigensystemHermitian ::
(Class.Floating a, RealOf a ~ ar, Class.Real ar) =>
BandedHermitian ShapeInt a -> QC.Property
eigensystemHermitian (BandedHermitian a) =
let (q0,d0) = BandedHermitian.eigensystem a
(q1,d1) = Hermitian.eigensystem $ BandedHermitian.toHermitian a
unit = Matrix.adjoint q0 <> q1
tol = selectReal 1e-4 1e-7
in not (or (ListHT.mapAdjacent (approxReal 0.1) (Array.toList d0)))
QC.==>
approxRealVectorTol tol d0 d1
&&
and
(zipWith
(\(r,c) x -> approxReal tol (absolute x) $ if r==c then 1 else 0)
(Shape.indices $ ArrMatrix.shape unit)
(Array.toList $ ArrMatrix.toVector unit))
checkForAll ::
(Show a, QC.Testable test) =>
Gen.T dim tag a -> (a -> test) -> Tagged tag QC.Property
checkForAll gen = Util.checkForAll (Gen.run gen 6 5)
checkForAllExtra ::
(Show a, Show b, QC.Testable test) =>
QC.Gen a -> Gen.T dim tag b ->
(a -> b -> test) -> Tagged tag QC.Property
checkForAllExtra = Gen.withExtra checkForAll
testsVar ::
(Show a, Show ar,
Class.Floating a, Eq a, RealOf a ~ ar, Class.Real ar) =>
[(String, Tagged a QC.Property)]
testsVar =
("index",
checkForAll
(Indexed.genMatrixIndexGen
(\(BandedHermitian arr) -> Matrix.indices arr)
genBandedHermitian)
(\(mix, BandedHermitian arr) -> Indexed.unitDot (mix, arr))) :
("convertToFull",
checkForAll genBandedHermitian convertToFull) :
("takeDiagonal",
checkForAll genBandedHermitian takeDiagonal) :
("sumRank1",
checkForAllExtra genOrder genScaledVectors sumRank1) :
("gramian",
checkForAll genSquare gramian) :
("multiplyIdentity",
checkForAllExtra QC.arbitraryBoundedEnum Gen.matrix multiplyIdentity) :
("multiplyDiagonal",
checkForAllExtra QC.arbitraryBoundedEnum
((,) <$> Gen.vectorReal <-*#> Gen.matrix) multiplyDiagonal) :
("multiplyFullIdentity",
checkForAll genBandedHermitian multiplyFullIdentity) :
("multiplyFullAny",
checkForAllExtra QC.arbitraryBoundedEnum
((,) <$> genBandedHermitian <#*#> Gen.matrix) multiplyFullAny) :
("multiplyHermitianVector",
checkForAllExtra QC.arbitraryBoundedEnum
((,) <$> genBandedHermitian <#*|> Gen.vector)
multiplyHermitianVector) :
("multiplyVectorDot",
checkForAll
((,,) <$> Gen.vector <-*#> genBandedHermitian <-*|> Gen.vector)
multiplyVectorDot) :
("multiplyFullColumns",
checkForAllExtra QC.arbitraryBoundedEnum
((,) <$> genBandedHermitian <#*#> Gen.matrix) multiplyFullColumns) :
("multiplyFullAssoc",
checkForAllExtra QC.arbitraryBoundedEnum
((,,) <$> genBandedHermitian <#*#> Gen.matrix <#*#> Gen.matrix)
multiplyFullAssoc) :
("determinant",
checkForAll genBandedHPD determinant) :
("multiplySolve",
checkForAll ((,) <$> genBandedHPD <#\#> Gen.matrix) multiplySolve) :
("solveDecomposed",
checkForAll ((,) <$> genBandedHPD <#\#> Gen.matrix) solveDecomposed) :
map
(mapSnd
($ ((\(BandedHermitian m) -> Divide.SquareMatrix m) <$> genBandedHPD)))
Divide.testsVarAny ++
("eigenvaluesDeterminant",
checkForAll genBandedHPD eigenvaluesDeterminant) :
("eigensystem",
checkForAll genBandedHermitian eigensystem) :
("eigenvaluesHermitian",
checkForAll genBandedHermitian eigenvaluesHermitian) :
("eigensystemHermitian",
checkForAll genBandedHermitian eigensystemHermitian) :
[]