inline-r-0.10: src/Language/R/Literal.hs
-- |
-- Copyright: 2013 (C) Amgen, Inc
--
{-# Language ConstraintKinds #-}
{-# Language DefaultSignatures #-}
{-# Language DataKinds #-}
{-# Language FlexibleContexts #-}
{-# Language FlexibleInstances #-}
{-# Language FunctionalDependencies #-}
{-# Language GADTs #-}
{-# Language LambdaCase #-}
{-# LANGUAGE OverloadedStrings #-}
{-# LANGUAGE ScopedTypeVariables #-}
{-# Language TemplateHaskell #-}
{-# LANGUAGE UndecidableInstances #-}
{-# Language ViewPatterns #-}
-- required to not warn about IsVector usage.
{-# OPTIONS_GHC -fno-warn-redundant-constraints #-}
module Language.R.Literal
( -- * Literals conversion
Literal(..)
, toPairList
, fromPairList
-- * Derived helpers
, fromSomeSEXP
, mkSEXP
, dynSEXP
, mkSEXPVector
, mkSEXPVectorIO
, mkProtectedSEXPVector
, mkProtectedSEXPVectorIO
-- * Internal
, funToSEXP
) where
import Control.Memory.Region
import Control.Monad.R.Class
import qualified Data.Vector.SEXP as SVector
import qualified Data.Vector.SEXP.Mutable as SMVector
import qualified Foreign.R as R
import qualified Foreign.R.Internal as R (somesexp)
import Foreign.R.Type ( IsVector, SSEXPTYPE )
import Foreign.R ( SEXP, SomeSEXP(..) )
import Internal.Error
import {-# SOURCE #-} Language.R.Internal (r1)
import Language.R.Globals (nilValue)
import Language.R.HExp
import Language.R.Instance
import Language.R.Internal.FunWrappers
import Language.R.Internal.FunWrappers.TH
import Data.Singletons ( Sing, SingI, fromSing, sing )
import Control.DeepSeq ( NFData )
import Control.Monad ( void, zipWithM_ )
import Data.Int (Int32)
import qualified Data.ByteString.Unsafe as B
import Data.Complex (Complex)
import Data.Text (Text)
import qualified Data.Text.Encoding as T
import Foreign ( FunPtr, castPtr )
import Foreign.C.String ( withCString )
import Foreign.Storable ( Storable, pokeElemOff )
import qualified GHC.Foreign as GHC
import GHC.IO.Encoding.UTF8
import System.IO.Unsafe ( unsafePerformIO )
-- | Values that can be converted to 'SEXP'.
class SingI ty => Literal a ty | a -> ty where
-- | Internal function for converting a literal to a 'SEXP' value. You
-- probably want to be using 'mkSEXP' instead.
mkSEXPIO :: a -> IO (SEXP V ty)
fromSEXP :: SEXP s ty -> a
default mkSEXPIO :: (IsVector ty, Literal [a] ty) => a -> IO (SEXP V ty)
mkSEXPIO x = mkSEXPIO [x]
default fromSEXP :: (IsVector ty, Literal [a] ty) => SEXP s ty -> a
fromSEXP (fromSEXP -> [x]) = x
fromSEXP _ = failure "fromSEXP" "Not a singleton vector."
-- | Create a SEXP value and protect it in current region
mkSEXP :: (Literal a b, MonadR m) => a -> m (SEXP (Region m) b)
mkSEXP x = acquire =<< io (mkSEXPIO x)
-- | Like 'fromSEXP', but with no static type satefy. Performs a dynamic
-- (i.e. at runtime) check instead.
fromSomeSEXP :: forall s a form. (Literal a form) => R.SomeSEXP s -> a
fromSomeSEXP = fromSEXP . R.cast (sing :: Sing form)
-- | Like 'fromSomeSEXP', but behaves like the @as.*@ family of functions
-- in R, by performing a best effort conversion to the target form (e.g. rounds
-- reals to integers, etc) for atomic types.
dynSEXP :: forall a s ty. (Literal a ty) => SomeSEXP s -> a
dynSEXP (SomeSEXP sx) =
fromSomeSEXP $ unsafePerformIO $ case fromSing (sing :: SSEXPTYPE ty) of
R.Char -> r1 "as.character" sx
R.Int -> r1 "as.integer" sx
R.Real -> r1 "as.double" sx
R.Complex -> r1 "as.complex" sx
R.Logical -> r1 "as.logical" sx
R.Raw -> r1 "as.raw" sx
_ -> return $ SomeSEXP $ R.release sx
{-# NOINLINE mkSEXPVector #-}
mkSEXPVector :: (Storable (SVector.ElemRep s a), IsVector a)
=> SSEXPTYPE a
-> [IO (SVector.ElemRep s a)]
-> SEXP s a
mkSEXPVector ty allocators = unsafePerformIO $ mkSEXPVectorIO ty allocators
mkSEXPVectorIO :: (Storable (SVector.ElemRep s a), IsVector a)
=> SSEXPTYPE a
-> [IO (SVector.ElemRep s a)]
-> IO (SEXP s a)
mkSEXPVectorIO ty allocators =
R.withProtected (R.allocVector ty $ length allocators) $ \vec -> do
let ptr = castPtr $ R.unsafeSEXPToVectorPtr vec
zipWithM_ (\i -> (>>= pokeElemOff ptr i)) [0..] allocators
return vec
{-# NOINLINE mkProtectedSEXPVector #-}
mkProtectedSEXPVector :: IsVector b
=> SSEXPTYPE b
-> [SEXP s a]
-> SEXP s b
mkProtectedSEXPVector ty xs = unsafePerformIO $ mkProtectedSEXPVectorIO ty xs
mkProtectedSEXPVectorIO :: IsVector b
=> SSEXPTYPE b
-> [SEXP s a]
-> IO (SEXP s b)
mkProtectedSEXPVectorIO ty xs = do
mapM_ (void . R.protect) xs
z <- R.withProtected (R.allocVector ty $ length xs) $ \vec -> do
let ptr = castPtr $ R.unsafeSEXPToVectorPtr vec
zipWithM_ (pokeElemOff ptr) [0..] xs
return vec
R.unprotect (length xs)
return z
instance Literal [R.Logical] 'R.Logical where
mkSEXPIO = mkSEXPVectorIO sing . map return
fromSEXP (hexp -> Logical v) = SVector.toList v
fromSEXP _ =
failure "fromSEXP" "Logical expected where some other expression appeared."
instance Literal [Int32] 'R.Int where
mkSEXPIO = mkSEXPVectorIO sing . map return
fromSEXP (hexp -> Int v) = SVector.toList v
fromSEXP _ =
failure "fromSEXP" "Int expected where some other expression appeared."
instance Literal [Double] 'R.Real where
mkSEXPIO = mkSEXPVectorIO sing . map return
fromSEXP (hexp -> Real v) = SVector.toList v
fromSEXP _ =
failure "fromSEXP" "Numeric expected where some other expression appeared."
instance Literal [Complex Double] 'R.Complex where
mkSEXPIO = mkSEXPVectorIO sing . map return
fromSEXP (hexp -> Complex v) = SVector.toList v
fromSEXP _ =
failure "fromSEXP" "Complex expected where some other expression appeared."
instance Literal [String] 'R.String where
mkSEXPIO =
mkSEXPVectorIO sing .
map (\str -> GHC.withCString utf8 str (R.mkCharCE R.CE_UTF8))
fromSEXP (hexp -> String v) =
map (\(hexp -> Char xs) -> SVector.toString xs) (SVector.toList v)
fromSEXP _ =
failure "fromSEXP" "String expected where some other expression appeared."
instance Literal Text 'R.String where
mkSEXPIO s =
mkSEXPVectorIO sing
[ B.unsafeUseAsCStringLen (T.encodeUtf8 s) $
uncurry (R.mkCharLenCE R.CE_UTF8) ]
fromSEXP (hexp -> String v) =
case SVector.toList v of
[hexp -> Char x] -> SVector.unsafeWithByteString x $ \p -> do
pure $ T.decodeUtf8 p
_ -> failure "fromSEXP" "Not a singleton vector"
fromSEXP _ =
failure "fromSEXP" "String expected where some other expression appeared."
-- | Create a pairlist from an association list. Result is either a pairlist or
-- @nilValue@ if the input is the null list. These are two distinct forms. Hence
-- why the type of this function is not more precise.
toPairList :: MonadR m => [(String, SomeSEXP (Region m))] -> m (SomeSEXP (Region m))
toPairList [] = return $ SomeSEXP (R.release nilValue)
toPairList ((k, SomeSEXP v):kvs) = do
-- No need to protect the tag because it's in the symbol table, so won't be
-- garbage collected.
tag <- io $ withCString k R.install
toPairList kvs >>= \case
SomeSEXP cdr@(hexp -> Nil) ->
fmap SomeSEXP $ unhexp $ List v cdr (R.unsafeRelease tag)
SomeSEXP cdr@(hexp -> List _ _ _) ->
fmap SomeSEXP $ unhexp $ List v cdr (R.unsafeRelease tag)
_ -> impossible "toPairList"
-- | Create an association list from a pairlist. R Pairlists are nil-terminated
-- chains of nested cons cells, as in LISP.
fromPairList :: SomeSEXP s -> [(String, SomeSEXP s)]
fromPairList (SomeSEXP (hexp -> Nil)) = []
fromPairList (SomeSEXP (hexp -> List car cdr (hexp -> Symbol (hexp -> Char name) _ _))) =
(SVector.toString name, SomeSEXP car) : fromPairList (SomeSEXP cdr)
fromPairList (SomeSEXP (hexp -> List _ _ _)) =
failure "fromPairList" "Association listed expected but tag not set."
fromPairList _ =
failure "fromPairList" "Pairlist expected where some other expression appeared."
-- Use the default definitions included in the class declaration.
instance Literal R.Logical 'R.Logical
instance Literal Int32 'R.Int
instance Literal Double 'R.Real
instance Literal (Complex Double) 'R.Complex
instance Literal String 'R.String where
mkSEXPIO x = mkSEXPIO [x]
fromSEXP x@(hexp -> String {})
| [h] <- fromSEXP x = h
| otherwise = failure "fromSEXP" "Not a singleton vector."
fromSEXP _ =
failure "fromSEXP" "String expected where some other expression appeared."
instance SVector.SVECTOR ty a => Literal (SVector.Vector ty a) ty where
mkSEXPIO = return . SVector.toSEXP
fromSEXP = SVector.fromSEXP . R.cast (sing :: SSEXPTYPE ty)
. SomeSEXP
instance SVector.VECTOR V ty a => Literal (SMVector.MVector V ty a) ty where
mkSEXPIO = unsafeRunRegion . SMVector.toSEXP
fromSEXP = SMVector.fromSEXP . R.cast (sing :: SSEXPTYPE ty)
. SomeSEXP . R.release
instance SingI a => Literal (SEXP s a) a where
mkSEXPIO = fmap R.unsafeRelease . return
fromSEXP = R.cast (sing :: SSEXPTYPE a) . SomeSEXP . R.unsafeRelease
instance Literal (SomeSEXP s) 'R.Any where
-- The ANYSXP type in R plays the same role as SomeSEXP in H. It is a dummy
-- type tag, that is never seen in any object. It serves only as a stand-in
-- when the real type is not known.
mkSEXPIO (SomeSEXP s) = return . R.unsafeRelease $ R.unsafeCoerce s
fromSEXP = SomeSEXP . R.unsafeRelease
instance (NFData a, Literal a b) => Literal (R s a) 'R.ExtPtr where
mkSEXPIO = funToSEXP wrap0
fromSEXP = unimplemented "Literal (R s a) fromSEXP"
instance (NFData b, Literal a a0, Literal b b0) => Literal (a -> R s b) 'R.ExtPtr where
mkSEXPIO = funToSEXP wrap1
fromSEXP = unimplemented "Literal (a -> R s b) fromSEXP"
instance (NFData c, Literal a a0, Literal b b0, Literal c c0)
=> Literal (a -> b -> R s c) 'R.ExtPtr where
mkSEXPIO = funToSEXP wrap2
fromSEXP = unimplemented "Literal (a -> b -> IO c) fromSEXP"
-- | A class for functions that can be converted to functions on SEXPs.
class HFunWrap a b | a -> b where
hFunWrap :: a -> b
instance (NFData a, Literal a la) => HFunWrap (R s a) (IO R.SEXP0) where
hFunWrap a = fmap R.unsexp $ (mkSEXPIO $!) =<< unsafeRunRegion a
instance (Literal a la, HFunWrap b wb)
=> HFunWrap (a -> b) (R.SEXP0 -> wb) where
hFunWrap f a = hFunWrap $ f $! fromSEXP (R.cast sing (R.somesexp a) :: SEXP s la)
foreign import ccall "missing_r.h funPtrToSEXP" funPtrToSEXP
:: FunPtr a -> IO (SEXP s 'R.ExtPtr)
funToSEXP :: HFunWrap a b => (b -> IO (FunPtr b)) -> a -> IO (SEXP s 'R.ExtPtr)
funToSEXP w x = funPtrToSEXP =<< w (hFunWrap x)
$(thWrapperLiterals 3 12)