hs-samtools-0.10.0.0: src/Data/SAM/Version1_6/Header/PG.hs
{-# LANGUAGE DeriveDataTypeable #-}
{-# LANGUAGE DeriveGeneric #-}
{-# LANGUAGE FlexibleContexts #-}
{-# LANGUAGE FlexibleInstances #-}
{-# LANGUAGE MultiParamTypeClasses #-}
{-# LANGUAGE OverloadedStrings #-}
{-# LANGUAGE StrictData #-}
{-# LANGUAGE TypeFamilies #-}
-- |
-- Module : Data.SAM.Version1_6.Header.PG
-- Copyright : (c) Matthew Mosior 2024
-- License : BSD-style
-- Maintainer : mattm.github@gmail.com
-- Portability : portable
--
-- = Description
--
-- This library enables the decoding/encoding of SAM, BAM and CRAM file formats.
module Data.SAM.Version1_6.Header.PG ( -- * SAM version 1.6 program data type
SAM_V1_6_Program(..),
-- * SAM version 1.6 program data types
SAM_V1_6_Program_Record_Identifier(..),
SAM_V1_6_Program_Name(..),
SAM_V1_6_Program_Command_Line(..),
SAM_V1_6_Program_Previous_PG_ID(..),
SAM_V1_6_Program_Description(..),
SAM_V1_6_Program_Version(..)
) where
import Data.ByteString
import Data.Data
import Generics.Deriving.Base
-- | Custom SAM (version 1.6) @"SAM_V1_6_Program"@ data type.
--
-- See section 1.3 of the [SAM v1.6](http://samtools.github.io/hts-specs/SAMv1.pdf) specification documentation.
data SAM_V1_6_Program = SAM_V1_6_Program
{ sam_v1_6_program_record_identifier :: SAM_V1_6_Program_Record_Identifier
, sam_v1_6_program_name :: Maybe SAM_V1_6_Program_Name
, sam_v1_6_program_command_line :: Maybe SAM_V1_6_Program_Command_Line
, sam_v1_6_program_previous_pg_id :: Maybe SAM_V1_6_Program_Previous_PG_ID
, sam_v1_6_program_description :: Maybe SAM_V1_6_Program_Description
, sam_v1_6_program_version :: Maybe SAM_V1_6_Program_Version
} deriving (Generic,Typeable)
instance Eq SAM_V1_6_Program where
SAM_V1_6_Program sam_v1_6_program_record_identifier1
sam_v1_6_program_name1
sam_v1_6_program_command_line1
sam_v1_6_program_previous_pg_id1
sam_v1_6_program_description1
sam_v1_6_program_version1 ==
SAM_V1_6_Program sam_v1_6_program_record_identifier2
sam_v1_6_program_name2
sam_v1_6_program_command_line2
sam_v1_6_program_previous_pg_id2
sam_v1_6_program_description2
sam_v1_6_program_version2 =
sam_v1_6_program_record_identifier1 == sam_v1_6_program_record_identifier2 &&
sam_v1_6_program_name1 == sam_v1_6_program_name2 &&
sam_v1_6_program_command_line1 == sam_v1_6_program_command_line2 &&
sam_v1_6_program_previous_pg_id1 == sam_v1_6_program_previous_pg_id2 &&
sam_v1_6_program_description1 == sam_v1_6_program_description2 &&
sam_v1_6_program_version1 == sam_v1_6_program_version2
instance Show SAM_V1_6_Program where
show (SAM_V1_6_Program record_identifier name command_line previous_pg_id description version) =
"SAM_V1_6_Program { " ++
"rsam_v1_6_program_record_identifier = " ++
(show record_identifier) ++
" , sam_v1_6_program_name = " ++
(show name) ++
" , sam_v1_6_program_command_line = " ++
(show command_line) ++
" , sam_v1_6_program_previous_pg_id = " ++
(show previous_pg_id) ++
" , sam_v1_6_program_description = " ++
(show description) ++
" , sam_v1_6_program_version = " ++
(show version) ++
" }"
-- | ID tag for @"SAM_V1_6_Program"@.
newtype SAM_V1_6_Program_Record_Identifier = SAM_V1_6_Program_Record_Identifier
{ sam_v1_6_program_record_identifier_value :: ByteString
} deriving (Generic,Typeable)
instance Eq SAM_V1_6_Program_Record_Identifier where
SAM_V1_6_Program_Record_Identifier sam_v1_6_program_record_identifier_value1 ==
SAM_V1_6_Program_Record_Identifier sam_v1_6_program_record_identifier_value2 =
sam_v1_6_program_record_identifier_value1 == sam_v1_6_program_record_identifier_value2
instance Show SAM_V1_6_Program_Record_Identifier where
show (SAM_V1_6_Program_Record_Identifier value) =
"SAM_V1_6_Program_Record_Identifier { " ++
"sam_v1_6_program_record_identifier_value = " ++
(show value) ++
" }"
-- | PN tag for @"SAM_V1_6_Program"@.
newtype SAM_V1_6_Program_Name = SAM_V1_6_Program_Name
{ sam_v1_6_program_name_value :: ByteString
} deriving (Generic,Typeable)
instance Eq SAM_V1_6_Program_Name where
SAM_V1_6_Program_Name sam_v1_6_program_name_value1 ==
SAM_V1_6_Program_Name sam_v1_6_program_name_value2 =
sam_v1_6_program_name_value1 == sam_v1_6_program_name_value2
instance Show SAM_V1_6_Program_Name where
show (SAM_V1_6_Program_Name value) =
"SAM_V1_6_Program_Name { " ++
"sam_v1_6_program_name_value = " ++
(show value) ++
" }"
-- | CL tag for @"SAM_V1_6_Program"@.
newtype SAM_V1_6_Program_Command_Line = SAM_V1_6_Program_Command_Line
{ sam_v1_6_program_command_line_value :: ByteString
} deriving (Generic,Typeable)
instance Eq SAM_V1_6_Program_Command_Line where
SAM_V1_6_Program_Command_Line sam_v1_6_program_command_line_value1 ==
SAM_V1_6_Program_Command_Line sam_v1_6_program_command_line_value2 =
sam_v1_6_program_command_line_value1 == sam_v1_6_program_command_line_value2
instance Show SAM_V1_6_Program_Command_Line where
show (SAM_V1_6_Program_Command_Line value) =
"SAM_V1_6_Program_Command_Line { " ++
"sam_v1_6_program_command_line_value = " ++
(show value) ++
" }"
-- | PP tag for @"SAM_V1_6_Program"@.
newtype SAM_V1_6_Program_Previous_PG_ID = SAM_V1_6_Program_Previous_PG_ID
{ sam_v1_6_program_previous_pg_id_value :: ByteString
} deriving (Generic,Typeable)
instance Eq SAM_V1_6_Program_Previous_PG_ID where
SAM_V1_6_Program_Previous_PG_ID sam_v1_6_program_previous_pg_id_value1 ==
SAM_V1_6_Program_Previous_PG_ID sam_v1_6_program_previous_pg_id_value2 =
sam_v1_6_program_previous_pg_id_value1 == sam_v1_6_program_previous_pg_id_value2
instance Show SAM_V1_6_Program_Previous_PG_ID where
show (SAM_V1_6_Program_Previous_PG_ID value) =
"SAM_V1_6_Program_Previous_PG_ID { " ++
"sam_v1_6_program_previous_pg_id_value = " ++
(show value) ++
" }"
-- | DS tag for @"SAM_V1_6_Program"@.
newtype SAM_V1_6_Program_Description = SAM_V1_6_Program_Description
{ sam_v1_6_program_description_value :: ByteString
} deriving (Generic,Typeable)
instance Eq SAM_V1_6_Program_Description where
SAM_V1_6_Program_Description sam_v1_6_program_description_value1 ==
SAM_V1_6_Program_Description sam_v1_6_program_description_value2 =
sam_v1_6_program_description_value1 == sam_v1_6_program_description_value2
instance Show SAM_V1_6_Program_Description where
show (SAM_V1_6_Program_Description value) =
"SAM_V1_6_Program_Description { " ++
"sam_v1_6_program_description_value = " ++
(show value) ++
" }"
-- | VN tag for @"SAM_V1_6_Program"@.
newtype SAM_V1_6_Program_Version = SAM_V1_6_Program_Version
{ sam_v1_6_program_version_value :: ByteString
} deriving (Generic,Typeable)
instance Eq SAM_V1_6_Program_Version where
SAM_V1_6_Program_Version sam_v1_6_program_version_value1 ==
SAM_V1_6_Program_Version sam_v1_6_program_version_value2 =
sam_v1_6_program_version_value1 == sam_v1_6_program_version_value2
instance Show SAM_V1_6_Program_Version where
show (SAM_V1_6_Program_Version value) =
"SAM_V1_6_Program_Version { " ++
"sam_v1_6_program_version_value = " ++
(show value) ++
" }"