name: heatitup-complete
version: 0.5.4.1
synopsis: Find and annotate ITDs with assembly or read pair joining.
description: Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion.
homepage: http://github.com/GregorySchwartz/heatitup-complete#readme
license: GPL-3
license-file: LICENSE
author: Gregory W. Schwartz
maintainer: gsch@pennmedicine.upenn.edu
copyright: Copyright: (c) 2019 Gregory W. Schwartz
category: Bioinformatics
build-type: Simple
-- extra-source-files:
cabal-version: >=1.10
library
hs-source-dirs: src
exposed-modules: Types
, Utility
, Parse
, Merge
, Blast
build-depends: base >= 4.7 && < 5
, bytestring
, cassava
, containers
, fasta
, foldl
, lens
, safe
, text
, text-show
, turtle
, vector
ghc-options: -O2
default-language: Haskell2010
executable heatitup-complete
hs-source-dirs: app
main-is: Main.hs
ghc-options: -threaded -rtsopts -O2
build-depends: base
, heatitup-complete
, bytestring
, cassava
, containers
, fasta
, foldl
, optparse-applicative
, pipes
, pipes-text
, safe
, text
, turtle
, vector
default-language: Haskell2010
source-repository head
type: git
location: https://github.com/GregorySchwartz/heatitup-complete