hasklepias-0.18.0: src/Cohort/Criteria.hs
{-|
Module : Cohort Criteria
Description : Defines the Criteria and related types and functions
Copyright : (c) NoviSci, Inc 2020
License : BSD3
Maintainer : bsaul@novisci.com
-}
{-# OPTIONS_HADDOCK hide #-}
{-# LANGUAGE Safe #-}
{-# LANGUAGE NoImplicitPrelude #-}
{-# LANGUAGE DeriveGeneric #-}
{-# LANGUAGE TupleSections #-}
module Cohort.Criteria(
Criterion
, Criteria(..)
, Status(..)
, CohortStatus(..)
, criterion
, criteria
, excludeIf
, includeIf
, initStatusInfo
, checkCohortStatus
) where
import safe GHC.Generics ( Generic )
import safe GHC.Num ( Num((+)), Natural )
import safe GHC.Show ( Show(show) )
import safe GHC.TypeLits ( KnownSymbol, symbolVal )
import safe Control.Applicative ( Applicative(pure) )
import safe Control.Monad ( Functor(..) )
import safe Data.Bifunctor ( Bifunctor(second) )
import safe Data.Bool ( Bool(..), otherwise, not, (&&) )
import safe Data.Either ( either )
import safe Data.Eq ( Eq(..) )
import safe Data.Function ( ($), (.), const, id )
import safe qualified Data.List.NonEmpty as NE
( NonEmpty, zip, fromList, toList, map )
import safe Data.List ( find, (++) )
import safe Data.Maybe ( Maybe(..), maybe )
import safe Data.Ord ( Ord(..), Ordering(..) )
import safe Data.Semigroup ( Semigroup((<>)) )
import safe Data.Tuple ( fst, snd )
import safe Data.Text ( Text, pack )
import safe Features.Compose ( getFeatureData
, Feature
, nameFeature
, FeatureN(..) )
-- | Defines the return type for @'Criterion'@ indicating whether to include or
-- exclude a subject.
data Status = Include | Exclude deriving (Eq, Show, Generic)
-- | Defines subject's diposition in a cohort either included or which criterion
-- they were excluded by. See @'checkCohortStatus'@ for evaluating a @'Criteria'@
-- to determine CohortStatus.
data CohortStatus =
Included | ExcludedBy (Natural, Text)
deriving (Eq, Show, Generic)
-- Defines an ordering to put @Included@ last in a container of @'CohortStatus'@.
-- The @'ExcludedBy'@ are ordered by their number value.
instance Ord CohortStatus where
compare Included Included = EQ
compare Included (ExcludedBy _) = GT
compare (ExcludedBy _) Included = LT
compare (ExcludedBy (i, _)) (ExcludedBy (j, _)) = compare i j
-- | Helper to convert a @Bool@ to a @'Status'@
--
-- >>> includeIf True
-- >>> includeIf False
-- Include
-- Exclude
includeIf :: Bool -> Status
includeIf True = Include
includeIf False = Exclude
-- | Helper to convert a @Bool@ to a @'Status'@
--
-- >>> excludeIf True
-- >>> excludeIf False
-- Exclude
-- Include
excludeIf :: Bool -> Status
excludeIf True = Exclude
excludeIf False = Include
-- | A type that is simply a @'FeatureN Status'@, that is, a feature that
-- identifies whether to @'Include'@ or @'Exclude'@ a subject.
newtype Criterion = MkCriterion ( FeatureN Status ) deriving (Eq, Show)
-- | Converts a @'Feature'@ to a @'Criterion'@.
criterion :: (KnownSymbol n) => Feature n Status -> Criterion
criterion x = MkCriterion (nameFeature x)
-- | A nonempty collection of @'Criterion'@ paired with a @Natural@ number.
newtype Criteria = MkCriteria {
getCriteria :: NE.NonEmpty (Natural, Criterion)
} deriving (Eq, Show)
-- | Constructs a @'Criteria'@ from a @'NE.NonEmpty'@ collection of @'Criterion'@.
criteria :: NE.NonEmpty Criterion -> Criteria
criteria l = MkCriteria $ NE.zip (NE.fromList [1..]) l
-- | Unpacks a @'Criterion'@ into a (Text, Status) pair where the text is the
-- name of the criterion and its @Status@ is the value of the status in the
-- @'Criterion'@. In the case, that the value of the @'Features.Compose.FeatureData'@
-- within the @'Criterion'@ is @Left@, the status is set to @'Exclude'@.
getStatus :: Criterion -> (Text, Status)
getStatus (MkCriterion x) =
either (const (nm, Exclude)) (nm,) ((getFeatureData . getDataN) x)
where nm = getNameN x
-- | Converts a subject's @'Criteria'@ into a @'NE.NonEmpty'@ triple of
-- (order of criterion, name of criterion, status)
getStatuses ::
Criteria -> NE.NonEmpty (Natural, Text, Status)
getStatuses (MkCriteria x) =
fmap (\c -> (fst c, (fst.getStatus.snd) c, (snd.getStatus.snd) c)) x
-- | An internal function used to @'Data.List.find'@ excluded statuses. Used in
-- 'checkCohortStatus'.
findExclude ::
Criteria -> Maybe (Natural, Text, Status)
findExclude x = find (\(_, _, z) -> z == Exclude) (getStatuses x)
-- | Converts a subject's @'Criteria'@ to a @'CohortStatus'@. The status is set
-- to @'Included'@ if none of the @'Criterion'@ have a status of @'Exclude'@.
checkCohortStatus ::
Criteria -> CohortStatus
checkCohortStatus x =
maybe Included (\(i, n, _) -> ExcludedBy (i, n)) (findExclude x)
-- | Utility to get the name of a @'Criterion'@.
getCriterionName :: Criterion -> Text
getCriterionName (MkCriterion x) = getNameN x
-- | Initializes a container of @'CohortStatus'@ from a @'Criteria'@. This can be used
-- to collect generate all the possible Exclusion/Inclusion reasons.
initStatusInfo :: Criteria -> NE.NonEmpty CohortStatus
initStatusInfo (MkCriteria z) =
NE.map (ExcludedBy . Data.Bifunctor.second getCriterionName) z <> pure Included