name: hPDB-examples
version: 0.99
stability: beta
homepage: https://github.com/mgajda/hpdb
package-url: http://hackage.haskell.org/package/hPDB
synopsis: Parser, print and manipulate structures in PDB file format.
description: Protein Data Bank file format is a most popular format for holding biomolecule data. This is a very fast parser (below 7s for the largest entry in PDB - 1HTQ which is over 70MB - as compared with 11s of RASMOL 2.7.5, or 2m15s of BioPython with Python 2.6 interpreter.) It is aimed to not only deliver event-based interface, but also a high-level data structure for manipulating data in spirit of BioPython's PDB parser.
category: Bioinformatics
license: BSD3
license-file: LICENSE
author: Michal J. Gajda
copyright: Copyright by Michal J. Gajda '2009-'2012
maintainer: mjgajda@googlemail.com
bug-reports: mailto:mjgajda@googlemail.com
build-type: Simple
cabal-version: >=1.8
tested-with: GHC==7.4.1, GHC==7.0.3, GHC==7.4.2
--Need to re-test: GHC==6.12.1, GHC==7.0.4, GHC==7.1.20101026
--data-files: 1CRN.pdb, 1HTQ.pdb, 3JYV.pdb
source-repository head
type: git
location: git://github.com:mgajda/hpdb-examples.git
Executable PDB2Fasta
main-is: examples/PDB2Fasta.hs
ghc-options: -fspec-constr-count=4 -O3
build-depends: base>=4.0, base <4.7, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 0.99
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash
Executable ShiftToCenter
main-is: examples/ShiftToCenter.hs
ghc-options: -fspec-constr-count=4 -O3
build-depends: base>=4.0, base <4.7, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 0.99, bytestring
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash
Executable CleanPDB
main-is: examples/CleanPDB.hs
ghc-options: -fspec-constr-count=4 -O3
build-depends: base>=4.0, base <4.7, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 0.99
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash
Executable SplitModels
main-is: examples/SplitModels.hs
ghc-options: -fspec-constr-count=4 -O3
build-depends: base>=4.0, base <4.7, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 0.99, bytestring
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash
Executable CanonicalAxes
main-is: examples/CanonicalAxes.hs
ghc-options: -fspec-constr-count=4 -O3
Build-depends: base>=4.0, base <4.7, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 0.99
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash
Executable PrintEvents
Main-is: tests/PrintEvents.hs
ghc-options: -fspec-constr-count=4 -O3
Build-depends: base>=4.0, base <4.7, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 0.99
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls
Executable PrintStructureObject
ghc-options: -fspec-constr-count=4 -O3
Build-depends: base>=4.0, base <4.7, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 0.99
Main-is: tests/PrintStructureObject.hs
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls
Executable Rg
main-is: examples/Rg.hs
ghc-options: -fspec-constr-count=4 -O3
Build-depends: base>=4.0, base <4.7, ghc-prim, bytestring, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 0.99
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls
Executable StericClashCheck
main-is: examples/StericClashCheck.hs
ghc-options: -fspec-constr-count=4 -O3
Build-Depends: base>=4.0, base<4.7, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, Octree >= 0.5, QuickCheck, text, text-format, hPDB >= 0.4
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls
-- if flag(haveOpenGL) -- why can't we make it conditionally available?
Executable Viewer
main-is: examples/Viewer.hs
ghc-options: -fspec-constr-count=4 -O3
Build-depends: base>=4.0, base <4.7, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, OpenGL, GLUT, hPDB >= 0.4, bytestring
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash