flowsim-0.2.8: flowsim.cabal

Name:           flowsim
Version:        0.2.8
License:        GPL
Cabal-Version:  >= 1.6
Author:         Ketil Malde
Maintainer:     Ketil Malde <ketil@malde.org>

Category:       Bioinformatics
Synopsis:       Simulate 454 pyrosequencing
Description:    Provides clonesim, a clone simulator that simulates shotgun 
                genomic clones, and flowsim, that takes the output from clonesim
                (or any other Fasta-formatted file) and generates simulated 
                reads from them mimicing Roche's 454 pyrosequencing technology,
                writing output in 454's native SFF format.  The flowgram
                generation is based on empirical distributions derived from real
                data (although analytic distributions are available too, if you
                prefer).
                .
                The Darcs repository is at <http://malde.org/~ketil/biohaskell/flowsim>.

HomePage:       http://blog.malde.org/index.php/flowsim/
-- Build-Depends:  bio >= 0.4.4, base >= 4 && <= 5, array >= 0.1, bytestring >= 0.9.1, random, MonadRandom, cmdargs <= 0.1.1, containers, directory
Build-Type:     Simple
Tested-with:    GHC==6.8.2, GHC==6.10, GHC==6.12.1

 -- Data-files:     README
Executable flowsim
  Main-Is:        FlowSim.hs
  Other-Modules:  Statistics, Config, EmpFile
                  Generations.GenBase, Generations.GS20, 
                  Generations.Titanium, Generations.Empirical
  Build-Depends:  bio >= 0.4.4, base >= 4 && < 5, array >= 0.1, random, MonadRandom, cmdargs >= 0.5, containers, bytestring, directory
  Ghc-Options:    -Wall
  Hs-Source-Dirs: src

Executable hplc
  Build-Depends:  bio >= 0.4.4, base >= 4 && < 5, containers, bytestring
  Main-Is:        HPLCount.hs
  Ghc-Options:    -main-is HPLCount
  Hs-Source-Dirs: src

Executable clonesim
  Main-Is:	  CloneSim.hs
  Build-Depends:  bio >= 0.4.4, base >= 4 && < 5, array >= 0.1, cmdargs >= 0.5, bytestring, MonadRandom
  Other-Modules:  Statistics
  Extensions: DeriveDataTypeable
  Ghc-Options: -Wall
  Hs-Source-Dirs: src