dataframe-fastcsv-1.3.0.0: src/DataFrame/IO/CSV/Fast.hs
{- | SIMD-accelerated CSV reader: a C scanner finds delimiter positions,
then each column is parsed directly from the mmap'd byte slices into
typed column builders. Chunk-parallel with @-threaded@ + @+RTS -N@.
-}
module DataFrame.IO.CSV.Fast (
fastReadCsv,
readCsvFast,
fastReadTsv,
readTsvFast,
fastReadCsvWithOpts,
fastReadTsvWithOpts,
fastReadCsvWithSchema,
fastReadCsvProj,
fastReadCsvFromBytes,
fastReadCsvFromBytesWithSchema,
readSeparated,
readSeparatedFromBytes,
readSeparatedFromBytesChunks,
getDelimiterIndices,
CsvParseError (..),
) where
import qualified Data.ByteString as BS
import qualified Data.ByteString.Internal as BSI
import qualified Data.Map as M
import qualified Data.Vector as Vector
import qualified Data.Vector.Storable as VS
import Data.Text (Text)
import Data.Word (Word8)
import System.IO.MMap (Mode (WriteCopy), mmapFileForeignPtr)
import DataFrame.IO.CSV (
ReadOptions (..),
TypeSpec (..),
defaultReadOptions,
)
import DataFrame.IO.CSV.Fast.Core (readSeparatedCore)
import DataFrame.IO.CSV.Fast.Index (
CsvParseError (..),
comma,
getDelimiterIndices,
tab,
)
import DataFrame.Internal.DataFrame (DataFrame (..))
import DataFrame.Schema (Schema (..))
readSeparatedDefault :: Word8 -> FilePath -> IO DataFrame
readSeparatedDefault separator =
readSeparated separator defaultReadOptions
fastReadCsv :: FilePath -> IO DataFrame
fastReadCsv = readSeparatedDefault comma
readCsvFast :: FilePath -> IO DataFrame
readCsvFast = fastReadCsv
fastReadTsv :: FilePath -> IO DataFrame
fastReadTsv = readSeparatedDefault tab
readTsvFast :: FilePath -> IO DataFrame
readTsvFast = fastReadTsv
{- | Like 'fastReadCsv' but takes a 'ReadOptions' record. Use this when
you need to tune ragged-row handling, unclosed-quote handling, or the
whitespace-trimming knob; otherwise stick with 'fastReadCsv'.
-}
fastReadCsvWithOpts :: ReadOptions -> FilePath -> IO DataFrame
fastReadCsvWithOpts = readSeparated comma
-- | TSV counterpart to 'fastReadCsvWithOpts'.
fastReadTsvWithOpts :: ReadOptions -> FilePath -> IO DataFrame
fastReadTsvWithOpts = readSeparated tab
{- | Read a CSV and coerce each column to the type declared in the
supplied 'Schema'. Schema columns bypass inference: parsed straight from
file bytes as the declared type, avoiding row-1 misclassification.
-}
fastReadCsvWithSchema :: Schema -> FilePath -> IO DataFrame
fastReadCsvWithSchema schema =
readSeparated
comma
defaultReadOptions
{ typeSpec =
SpecifyTypes (M.toList (elements schema)) (typeSpec defaultReadOptions)
}
-- | In-memory version of 'fastReadCsv'.
fastReadCsvFromBytes :: BS.ByteString -> IO DataFrame
fastReadCsvFromBytes = readSeparatedFromBytes comma defaultReadOptions
fastReadCsvFromBytesWithSchema :: Schema -> BS.ByteString -> IO DataFrame
fastReadCsvFromBytesWithSchema schema =
readSeparatedFromBytes
comma
defaultReadOptions
{ typeSpec =
SpecifyTypes (M.toList (elements schema)) (typeSpec defaultReadOptions)
}
{- | Read a CSV and return only the named columns, in the order given.
The SIMD scan and delimiter classification still run over the whole
file, but unreferenced columns are dropped from the result.
-}
fastReadCsvProj :: [Text] -> FilePath -> IO DataFrame
fastReadCsvProj projection path = do
df <- fastReadCsv path
pure (projectColumns projection df)
{- | Filter a DataFrame's columns down to (and in the order of) the
supplied names. Missing names are silently dropped; check the result's
'columnIndices' map for strict semantics.
-}
projectColumns :: [Text] -> DataFrame -> DataFrame
projectColumns names df =
let idxs = [(n, i) | n <- names, Just i <- [M.lookup n (columnIndices df)]]
newCols = Vector.fromListN (length idxs) [columns df Vector.! i | (_, i) <- idxs]
newIndices = M.fromList (zip (map fst idxs) [0 ..])
(rows, _) = dataframeDimensions df
in DataFrame newCols newIndices (rows, length idxs) M.empty
-- | Reads via a private ('WriteCopy') mmap so the buffer is never copied.
readSeparated ::
Word8 ->
ReadOptions ->
FilePath ->
IO DataFrame
readSeparated separator opts filePath = do
(bufferPtr, offset, len) <-
mmapFileForeignPtr
filePath
WriteCopy
Nothing
readSeparatedCore
Nothing
separator
opts
(VS.unsafeFromForeignPtr bufferPtr offset len)
{- | Identical to 'readSeparated' but reads from an already-loaded byte
buffer (e.g. a slice of a memory-mapped file). Zero-copy: the bytes are
only read, never modified or grown.
-}
readSeparatedFromBytes ::
Word8 ->
ReadOptions ->
BS.ByteString ->
IO DataFrame
readSeparatedFromBytes separator opts bs = do
let (fp, off, len) = BSI.toForeignPtr bs
readSeparatedCore Nothing separator opts (VS.unsafeFromForeignPtr fp off len)
{- | 'readSeparatedFromBytes' with a forced chunk count, bypassing the
capability/size gate. Intended for tests and benchmarks that need to pin
the parallel split; @1@ forces the sequential path.
-}
readSeparatedFromBytesChunks ::
Int ->
Word8 ->
ReadOptions ->
BS.ByteString ->
IO DataFrame
readSeparatedFromBytesChunks nChunks separator opts bs = do
let (fp, off, len) = BSI.toForeignPtr bs
readSeparatedCore
(Just nChunks)
separator
opts
(VS.unsafeFromForeignPtr fp off len)