packages feed

convert-annotation-0.4.0.0: README.org

* convert-annotation

Very early stages. Mix between =HTTP= and =wreq= libraries, need to fully
convert to =wreq= in the future.

Each mode, =info= or =annotation=, has its own help.

Main usage to convert, say, some unknown annotation to Ensembl annotation in a
=csv=:

#+BEGIN_SRC sh
cat input.csv | convert-annotation annotation --database "Ensembl" --column "gene"
#+END_SRC

#+BEGIN_SRC sh :exports results :results value code
convert-annotation -h
#+END_SRC

#+RESULTS:
#+BEGIN_SRC sh
convert-annotation, Gregory W. Schwartz. Converts an unknown annotation to some
other annotation.

Usage: convert-annotation (info | annotation)

Available options:
  -h,--help                Show this help text

Available commands:
  info                     
  annotation               
#+END_SRC