cobot-io-0.1.5.1: cobot-io.cabal
cabal-version: 1.12
-- This file has been generated from package.yaml by hpack version 0.35.0.
--
-- see: https://github.com/sol/hpack
name: cobot-io
version: 0.1.5.1
synopsis: Biological data file formats and IO
description: Please see the README on GitHub at <https://github.com/biocad/cobot-io#readme>
category: Bio
homepage: https://github.com/biocad/cobot-io#readme
bug-reports: https://github.com/biocad/cobot-io/issues
author: Pavel Yakovlev, Bogdan Neterebskii, Alexander Sadovnikov
maintainer: pavel@yakovlev.me
copyright: 2020, Biocad
license: BSD3
license-file: LICENSE
build-type: Simple
tested-with:
GHC ==8.10.7
|| ==9.0.2
|| ==9.2.5
|| ==9.4.4
extra-source-files:
README.md
ChangeLog.md
test/GB/fromYanaWithLove.gb
test/GB/pAAV-GFP-CellBioLab-dots.gb
test/GB/pAAV-GFP-CellBioLab.gb
test/GB/pAAV_CMV_RPE65_PolyA_linkers.gb
test/GB/pIntA-TRBV.gb
test/FASTA/correct.fasta
test/FASTA/order1.fasta
test/FASTA/order2.fasta
test/FASTA/order3.fasta
test/FASTA/order4.fasta
test/FASTA/order5.fasta
test/FASTA/order6.fasta
test/FASTA/order7.fasta
test/FASTA/order8.fasta
test/MAE/Capri.mae
test/MAE/docking_1.mae
test/MAE/docking_1_2.mae
test/MAE/docking_2.mae
test/MAE/GLY_3.mae
test/MAE/h2o.mae
test/MAE/schrod_test.mae
test/MAE/small.mae
test/PDB/1PPE_I.mae
test/PDB/BondsRestoring/1vfb_ab_b.mae
test/PDB/BondsRestoring/3mxw_ab_b.mae
test/PDB/BondsRestoring/4dn4_ag_b.mae
test/PDB/BondsRestoring/ALA_3.mae
test/PDB/BondsRestoring/ARG_3.mae
test/PDB/BondsRestoring/ASN_3.mae
test/PDB/BondsRestoring/ASP_3.mae
test/PDB/BondsRestoring/CYS_3.mae
test/PDB/BondsRestoring/GLN_3.mae
test/PDB/BondsRestoring/GLU_3.mae
test/PDB/BondsRestoring/GLY_3.mae
test/PDB/BondsRestoring/HID_3.mae
test/PDB/BondsRestoring/HIE_3.mae
test/PDB/BondsRestoring/HIP_3.mae
test/PDB/BondsRestoring/ILE_3.mae
test/PDB/BondsRestoring/LEU_3.mae
test/PDB/BondsRestoring/LYS_3.mae
test/PDB/BondsRestoring/MET_3.mae
test/PDB/BondsRestoring/PHE_3.mae
test/PDB/BondsRestoring/PRO_3.mae
test/PDB/BondsRestoring/SER_3.mae
test/PDB/BondsRestoring/THR_3.mae
test/PDB/BondsRestoring/TRP_3.mae
test/PDB/BondsRestoring/TYR_3.mae
test/PDB/BondsRestoring/VAL_3.mae
test/PDB/1igt.pdb
test/PDB/1PPE_I.pdb
test/PDB/6a0z.HLHL.pdb
test/PDB/BondsRestoring/1vfb_ab_b.pdb
test/PDB/BondsRestoring/3mxw_ab_b.pdb
test/PDB/BondsRestoring/4dn4_ag_b.pdb
test/PDB/BondsRestoring/ALA_3.pdb
test/PDB/BondsRestoring/ARG_3.pdb
test/PDB/BondsRestoring/ASN_3.pdb
test/PDB/BondsRestoring/ASP_3.pdb
test/PDB/BondsRestoring/CYS_3.pdb
test/PDB/BondsRestoring/GLN_3.pdb
test/PDB/BondsRestoring/GLU_3.pdb
test/PDB/BondsRestoring/GLY_3.pdb
test/PDB/BondsRestoring/HID_3.pdb
test/PDB/BondsRestoring/HIE_3.pdb
test/PDB/BondsRestoring/HIP_3.pdb
test/PDB/BondsRestoring/ILE_3.pdb
test/PDB/BondsRestoring/LEU_3.pdb
test/PDB/BondsRestoring/LYS_3.pdb
test/PDB/BondsRestoring/MET_3.pdb
test/PDB/BondsRestoring/PHE_3.pdb
test/PDB/BondsRestoring/PRO_3.pdb
test/PDB/BondsRestoring/SER_3.pdb
test/PDB/BondsRestoring/THR_3.pdb
test/PDB/BondsRestoring/TRP_3.pdb
test/PDB/BondsRestoring/TYR_3.pdb
test/PDB/BondsRestoring/VAL_3.pdb
test/PDB/Writer/big_file.pdb
test/PDB/Writer/hetatms.pdb
test/PDB/Writer/several_models.pdb
test/ABI/bad.ab1
test/ABI/bad_at_the_end.ab1
test/ABI/bad_quality.ab1
test/ABI/test.ab1
test/ABI/not_ab1.txt
test/MMTF/1FSD.dms
source-repository head
type: git
location: https://github.com/biocad/cobot-io
library
exposed-modules:
Bio.ABI
Bio.ABI.Clean
Bio.ABI.Decode
Bio.FASTA
Bio.FASTA.Parser
Bio.FASTA.Type
Bio.FASTA.Writer
Bio.GB
Bio.GB.Parser
Bio.GB.Type
Bio.GB.Writer
Bio.MAE
Bio.MAE.Parser
Bio.MAE.Type
Bio.MMTF
Bio.MMTF.Decode
Bio.MMTF.Decode.Codec
Bio.MMTF.Decode.MessagePack
Bio.MMTF.MessagePack
Bio.MMTF.Type
Bio.PDB
Bio.PDB.BondRestoring
Bio.PDB.Functions
Bio.PDB.Parser
Bio.PDB.Reader
Bio.PDB.Type
Bio.PDB.Writer
Bio.Sequence
Bio.Sequence.Basecalled
Bio.Sequence.Basecalled.Type
Bio.Sequence.Class
Bio.Sequence.Functions.Marking
Bio.Sequence.Functions.Sequence
Bio.Sequence.Functions.Weight
Bio.Sequence.Range
Bio.Sequence.Utilities
Bio.Structure
Bio.Structure.Functions
Bio.Uniprot
Bio.Uniprot.Parser
Bio.Uniprot.Type
Bio.Utils.Map
Bio.Utils.Vector
other-modules:
Paths_cobot_io
hs-source-dirs:
src
default-extensions:
DeriveGeneric
DeriveFunctor
DeriveFoldable
DeriveAnyClass
FlexibleInstances
InstanceSigs
MultiParamTypeClasses
RecordWildCards
ScopedTypeVariables
OverloadedStrings
TypeApplications
TypeFamilies
DataKinds
ConstraintKinds
TypeOperators
TemplateHaskell
FlexibleContexts
build-depends:
array ==0.5.*
, attoparsec >=0.10 && <0.15
, base >=4.14 && <5
, binary >=0.8.3.0 && <1.0
, bytestring >=0.10.8.1 && <0.12
, cobot >=0.1.1.7
, containers >=0.5.7.1 && <0.7
, data-msgpack >=0.0.9 && <0.1
, deepseq ==1.4.*
, filepath
, http-conduit ==2.3.*
, hyraxAbif >=0.2.3.27 && <0.2.5.0
, lens >=4.16 && <5.3
, linear >=1.20 && <1.23
, megaparsec >=9.0.1
, mtl >=2.2.1 && <2.4
, parser-combinators >=1.2.1
, split
, text >=1.2.2.1 && <2.1
, vector
default-language: Haskell2010
if impl(ghc >= 9.0)
ghc-options: -haddock -Winvalid-haddock
test-suite cobot-io-test
type: exitcode-stdio-1.0
main-is: Spec.hs
other-modules:
ABISpec
FastaParserSpec
FASTASpec
FastaWriterSpec
GBParserSpec
GBWriterSpec
MAEParserSpec
MAESpec
MMTFSpec
PDBParserSpec
PDBSpec
PDBWriterSpec
RangeSpec
SequenceSpec
StructureSpec
UniprotSpec
Paths_cobot_io
hs-source-dirs:
test
default-extensions:
OverloadedStrings
TypeFamilies
ghc-options: -threaded -rtsopts -with-rtsopts=-N
build-depends:
QuickCheck >=2.9.2 && <2.15
, array ==0.5.*
, attoparsec >=0.10 && <0.15
, base >=4.14 && <5
, binary >=0.8.3.0 && <1.0
, bytestring >=0.10.8.1 && <0.12
, cobot >=0.1.1.7
, cobot-io
, containers >=0.5.7.1 && <0.7
, data-msgpack >=0.0.9 && <0.1
, deepseq ==1.4.*
, directory
, filepath
, hspec >=2.4.1 && <2.11
, http-conduit ==2.3.*
, hyraxAbif >=0.2.3.27 && <0.2.5.0
, lens >=4.16 && <5.3
, linear
, megaparsec >=9.0.1
, mtl >=2.2.1 && <2.4
, neat-interpolation >=0.3
, parser-combinators >=1.2.1
, split
, text >=1.2.2.1 && <2.1
, vector
default-language: Haskell2010