cobot-io-0.1.2.0: test/GBParserSpec.hs
{-# LANGUAGE OverloadedStrings #-}
module GBParserSpec where
import Bio.GB (Feature (..), Form (..), GenBankSequence (..),
Locus (..), Meta (..), Reference (..),
Source (..), Version (..), fromFile)
import Bio.Sequence (Range, unsafeMarkedSequence)
import Test.Hspec
gbParserSpec :: Spec
gbParserSpec = describe "GenBank format parser." $ do
pAAVGFPSpecP "test/GB/pAAV-GFP-CellBioLab.gb"
pAAVCMVSpecP "test/GB/pAAV_CMV_RPE65_PolyA_linkers.gb"
dottedMetaSpecP "test/GB/pAAV-GFP-CellBioLab-dots.gb"
pAAVGFPSpecP :: FilePath -> Spec
pAAVGFPSpecP path = describe "pAAVGFP" $ do
it "correctly parses meta information" $ do
mt <- meta <$> fromFile path
mt `shouldBe` pAAVGFPMeta
it "correctly parses structSeq" $ do
gbS <- gbSeq <$> fromFile path
gbS `shouldBe` unsafeMarkedSequence pAAVGFPOrigin pAAVGFPFeatures
pAAVCMVSpecP :: FilePath -> Spec
pAAVCMVSpecP path = describe "pAAVCMV" $ do
it "parses meta information" $ do
mt <- meta <$> fromFile path
mt `shouldBe` pAAVCMVMeta
it "correctly parses structSeq" $ do
gbS <- gbSeq <$> fromFile path
gbS `shouldBe` unsafeMarkedSequence pAAVCMVOrigin pAAVCMVFeatures
dottedMetaSpecP :: FilePath -> Spec
dottedMetaSpecP path = describe "Meta with dots." $ do
it "correctly parses meta information with all info set to dots" $ do
mt <- meta <$> fromFile path
mt `shouldBe` dottedMeta
pAAVGFPMeta :: Meta
pAAVGFPMeta = Meta { locus=Locus "pAAV-GFP-CellBio" 5374 "ds-DNA" (Just Circular) (Just "SYN") "15-AUG-2016"
, definition=Just $ "Saccharomyces cerevisiae TCP1-beta gene, partial cds, and Axl2p\n(AXL2) and Rev7p (REV7) genes, complete cds."
, accession=Just $ "U49845"
, version=Just $ Version "U49845.1" $ Just "1293613"
, keywords=Just "."
, source=Just $ Source "synthetic DNA construct" $ Just "synthetic DNA construct\nsynthetic DNA construct hmmm interesting"
, references=[ Reference "1 (bases 1 to 5374)" (Just "avprok") (Just "Direct Submission") (Just "Exported Monday, August 15, 2016 from SnapGene 3.1.4 to Vector \nNTI(R) format\nhttp://www.snapgene.com") Nothing
, Reference "2 (bases 1 to 5028)" (Just "Roemer,T., Madden,K., Chang,J. and Snyder,M.") (Just "Selection of axial growth sites in yeast requires Axl2p, a novel\nplasma membrane glycoprotein") (Just "Genes Dev. 10 (7), 777-793 (1996)") (Just "8846915")
, Reference "3 (bases 1 to 5028)" (Just "Roemer,T.") (Just "Direct Submission") (Just "Submitted (22-FEB-1996) Terry Roemer, Biology, Yale University, New\nHaven, CT, USA") Nothing
]
, comments=["VNTDATE|745891200|", "VNTDBDATE|778204800|", "VNTNAME|pAAV-GFP-CellBioLab|", "VNTAUTHORNAME|avprok|"]
}
pAAVGFPFeatures :: [(Feature, Range)]
pAAVGFPFeatures = [ ( (Feature "misc_feature" True [ ("label", "Right ITR")
]
), (0, 130))
, ( (Feature "enhancer" True [ ("label", "CMV enhancer")
, ("note", "human cytomegalovirus immediate early enhancer")
]
), (205, 509))
, ( (Feature "promoter" True [ ("label", "CMV promoter")
, ("note", "human cytomegalovirus (CMV) immediate early \npromoter")
]
), (509, 712))
, ( (Feature "misc_feature" True [ ("label", "Human beta-globin Intron")
]
), (804, 1297))
, ( (Feature "CDS" True [ ("codon_start", "1")
, ("product", "enhanced GFP")
, ("label", "EGFP")
, ("note", "mammalian codon-optimized")
]
), (1319, 2036))
, ( (Feature "repeat_region" False [ ("label", "Left ITR")
, ("note", "inverted terminal repeat of adeno-associated virus \nserotype 2\noooooo")
, ("prop", "1")
]
), (2636, 2777))
]
pAAVGFPOrigin :: String
pAAVGFPOrigin =
"cctgcaggcagctgcgcgctcgctcgctcactgaggccgcccgggcgtcgggcgacctttggtcgcccggcctcagtgagcgagcgagcgcgcagagagggagtggccaactccatcactaggggttcctgcggccgcacgcgtctagttattaatagtaatcaattacggggtcattagttcatagcccatatatggagttccgcgttacataacttacggtaaatggcccgcctggctgaccgcccaacgacccccgcccattgacgtcaataatgacgtatgttcccatagtaacgtcaatagggactttccattgacgtcaatgggtggagtatttacggtaaactgcccacttggcagtacatcaagtgtatcatatgccaagtacgccccctattgacgtcaatgacggtaaatggcccgcctggcattatgcccagtacatgaccttatgggactttcctacttggcagtacatctacgtattagtcatcgctattaccatggtgatgcggttttggcagtacatcaatgggcgtggatagcggtttgactcacggggatttccaagtctccaccccattgacgtcaatgggagtttgttttgcaccaaaatcaacgggactttccaaaatgtcgtaacaactccgccccattgacgcaaatgggcggtaggcgtgtacggtgggaggtctatataagcagagctcgtttagtgaaccgtcagatcgcctggagacgccatccacgctgttttgacctccatagaagacaccgggaccgatccagcctccgcggattcgaatcccggccgggaacggtgcattggaacgcggattccccgtgccaagagtgacgtaagtaccgcctatagagtctataggcccacaaaaaatgctttcttcttttaatatacttttttgtttatcttatttctaatactttccctaatctctttctttcagggcaataatgatacaatgtatcatgcctctttgcaccattctaaagaataacagtgataatttctgggttaaggcaatagcaatatttctgcatataaatatttctgcatataaattgtaactgatgtaagaggtttcatattgctaatagcagctacaatccagctaccattctgcttttattttatggttgggataaggctggattattctgagtccaagctaggcccttttgctaatcatgttcatacctcttatcttcctcccacagctcctgggcaacgtgctggtctgtgtgctggcccatcactttggcaaagaattgggattcgaacatcgattgaattctgaatggtgagcaagggcgaggagctgttcaccggggtggtgcccatcctggtcgagctggacggcgacgtaaacggccacaagttcagcgtgtccggcgagggcgagggcgatgccacctacggcaagctgaccctgaagttcatctgcaccaccggcaagctgcccgtgccctggcccaccctcgtgaccaccctgacctacggcgtgcagtgcttcagccgctaccccgaccacatgaagcagcacgacttcttcaagtccgccatgcccgaaggctacgtccaggagcgcaccatcttcttcaaggacgacggcaactacaagacccgcgccgaggtgaagttcgagggcgacaccctggtgaaccgcatcgagctgaagggcatcgacttcaaggaggacggcaacatcctggggcacaagctggagtacaactacaacagccacaacgtctatatcatggccgacaagcagaagaacggcatcaaggtgaacttcaagatccgccacaacatcgaggacggcagcgtgcagctcgccgaccactaccagcagaacacccccatcggcgacggccccgtgctgctgcccgacaaccactacctgagcacccagtccgccctgagcaaagaccccaacgagaagcgcgatcacatggtcctgctggagttcgtgaccgccgccgggatcactctcggcatggacgagctgtacaagtactcagatctcgagctcaagtagggatcctctagagtcgacctgcagaagcttgcctcgagcagcgctgctcgagagatctacgggtggcatccctgtgacccctccccagtgcctctcctggccctggaagttgccactccagtgcccaccagccttgtcctaataaaattaagttgcatcattttgtctgactaggtgtccttctataatattatggggtggaggggggtggtatggagcaaggggcaagttgggaagacaacctgtagggcctgcggggtctattgggaaccaagctggagtgcagtggcacaatcttggctcactgcaatctccgcctcctgggttcaagcgattctcctgcctcagcctcccgagttgttgggattccaggcatgcatgaccaggctcagctaatttttgtttttttggtagagacggggtttcaccatattggccaggctggtctccaactcctaatctcaggtgatctacccaccttggcctcccaaattgctgggattacaggcgtgaaccactgctcccttccctgtccttctgattttgtaggtaaccacgtgcggaccgagcggccgcaggaacccctagtgatggagttggccactccctctctgcgcgctcgctcgctcactgaggccgggcgaccaaaggtcgcccgacgcccgggctttgcccgggcggcctcagtgagcgagcgagcgcgcagctgcctgcaggggcgcctgatgcggtattttctccttacgcatctgtgcggtatttcacaccgcatacgtcaaagcaaccatagtacgcgccctgtagcggcgcattaagcgcggcgggtgtggtggttacgcgcagcgtgaccgctacacttgccagcgccctagcgcccgctcctttcgctttcttcccttcctttctcgccacgttcgccggctttccccgtcaagctctaaatcgggggctccctttagggttccgatttagtgctttacggcacctcgaccccaaaaaacttgatttgggtgatggttcacgtagtgggccatcgccctgatagacggtttttcgccctttgacgttggagtccacgttctttaatagtggactcttgttccaaactggaacaacactcaaccctatctcgggctattcttttgatttataagggattttgccgatttcggcctattggttaaaaaatgagctgatttaacaaaaatttaacgcgaattttaacaaaatattaacgtttacaattttatggtgcactctcagtacaatctgctctgatgccgcatagttaagccagccccgacacccgccaacacccgctgacgcgccctgacgggcttgtctgctcccggcatccgcttacagacaagctgtgaccgtctccgggagctgcatgtgtcagaggttttcaccgtcatcaccgaaacgcgcgagacgaaagggcctcgtgatacgcctatttttataggttaatgtcatgataataatggtttcttagacgtcaggtggcacttttcggggaaatgtgcgcggaacccctatttgtttatttttctaaatacattcaaatatgtatccgctcatgagacaataaccctgataaatgcttcaataatattgaaaaaggaagagtatgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcctgtttttgctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgcacgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgccccgaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcccgtattgacgccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttggttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaattatgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatcggaggaccgaaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgccttgatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatgcctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagcttcccggcaacaattaatagactggatggaggcggataaagttgcaggaccacttctgcgctcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtgggtctcgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctacacgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcctcactgattaagcattggtaactgtcagaccaagtttactcatatatactttagattgatttaaaacttcatttttaatttaaaaggatctaggtgaagatcctttttgataatctcatgaccaaaatcccttaacgtgagttttcgttccactgagcgtcagaccccgtagaaaagatcaaaggatcttcttgagatcctttttttctgcgcgtaatctgctgcttgcaaacaaaaaaaccaccgctaccagcggtggtttgtttgccggatcaagagctaccaactctttttccgaaggtaactggcttcagcagagcgcagataccaaatactgtccttctagtgtagccgtagttaggccaccacttcaagaactctgtagcaccgcctacatacctcgctctgctaatcctgttaccagtggctgctgccagtggcgataagtcgtgtcttaccgggttggactcaagacgatagttaccggataaggcgcagcggtcgggctgaacggggggttcgtgcacacagcccagcttggagcgaacgacctacaccgaactgagatacctacagcgtgagctatgagaaagcgccacgcttcccgaagggagaaaggcggacaggtatccggtaagcggcagggtcggaacaggagagcgcacgagggagcttccagggggaaacgcctggtatctttatagtcctgtcgggtttcgccacctctgacttgagcgtcgatttttgtgatgctcgtcaggggggcggagcctatggaaaaacgccagcaacgcggcctttttacggttcctggccttttgctggccttttgctcacatgt"
pAAVCMVMeta :: Meta
pAAVCMVMeta = Meta { locus=Locus "pAAV_CMV_RPE65_P" 6265 "ds-DNA" (Just Linear) Nothing "23-JAN-2019"
, definition=Nothing
, accession=Nothing
, version=Nothing
, keywords=Nothing
, source=Nothing
, references=[]
, comments=["Created by vasilyevaas@biocad.ru", "Core from file: pAAV_core_ITR2", "", "ApEinfo:methylated:1"]
}
pAAVCMVFeatures :: [(Feature, Range)]
pAAVCMVFeatures = [ ( (Feature "rep_origin" True [ ("direction", "RIGHT")
, ("note", "f1 bacteriophage origin of replication; arrow\r\nindicates direction of (+) strand synthesis")
, ("label", "f1 ori")
, ("ApEinfo_fwdcolor", "#999999")
, ("ApEinfo_revcolor", "#999999")
, ("ApEinfo_graphicformat", "arrow_data {{0 1 2 0 0 -1} {} 0}\r\nwidth 5 offset 0")
]
), (3742, 4198))
, ( (Feature "promoter" True [ ("gene", "bla")
, ("label", "AmpR promoter")
, ("ApEinfo_fwdcolor", "#346ee0")
, ("ApEinfo_revcolor", "#346ee0")
, ("ApEinfo_graphicformat", "arrow_data {{0 1 2 0 0 -1} {} 0}\r\nwidth 5 offset 0")
]
), (4479, 4584))
, ( (Feature "CDS" True [ ("codon_start", "1")
, ("gene", "bla")
, ("product", "beta-lactamase")
, ("note", "confers resistance to ampicillin, carbenicillin,\r\nand related antibiotics")
, ("label", "AmpR")
, ("ApEinfo_fwdcolor", "#e9d024")
, ("ApEinfo_revcolor", "#e9d024")
, ("ApEinfo_graphicformat", "arrow_data {{0 1 2 0 0 -1} {} 0}\r\nwidth 5 offset 0")
]
), (4584, 5445))
, ( (Feature "misc_feature" True [ ("label", "RightITR2")
, ("ApEinfo_fwdcolor", "#7eff74")
, ("ApEinfo_revcolor", "#7eff74")
, ("ApEinfo_graphicformat", "arrow_data {{0 1 2 0 0 -1} {} 0}\r\nwidth 5 offset 0")
]
), (3527, 3668))
, ( (Feature "misc_feature" False [ ("label", "A->T")
]
), (199, 200))
]
pAAVCMVOrigin :: String
pAAVCMVOrigin =
"CCTGCAGGCAGCTGCGCGCTCGCTCGCTCACTGAGGCCGCCCGGGCGTCGGGCGACCTTTGGTCGCCCGGCCTCAGTGAGCGAGCGAGCGCGCAGAGAGGGAGTGGCCAACTCCATCACTAGGGGTTCCTGCGGCCCGACATTCCGGAGGTACCTCTAGATTGGCAAACAGCTATTATGGGTATTATGGGTctagttattaatagtaatcaattacggggtcattagttcatagcccatatatggagttccgcgttacataacttacggtaaatggcccgcctggctgaccgcccaacgacccccgcccattgacgtcaataatgacgtatgttcccatagtaacgccaatagggactttccattgacgtcaatgggtggagtatttacggtaaactgcccacttggcagtacatcaagtgtatcatatgccaagtacgccccctattgacgtcaatgacggtaaatggcccgcctggcattatgcccagtacatgaccttatgggactttcctacttggcagtacatctacgtattagtcatcgctattaccatggtgatgcggttttggcagtacatcaatgggcgtggatagcggtttgactcacggggatttccaagtctccaccccattgacgtcaatgggagtttgttttgGcaccaaaatcaacgggactttccaaaatgtcgtaacaactccgccccattgacgcaaatgggcggtaggcgtgtacggtgggaggtctatataagcagagctcgtttagtgaaccgtcagatcgcctggagacgccatccacgctgttttgacctccatagaagacaccgggaccgatccagcctccgcggattcgaatcccggccgggaacggtgcattggaacgcggattccccgtgccaagagtgacgtaagtaccgcctatagagtctataggcccacaaaaaatgctttcttcttttaatatacttttttgtttatcttatttctaatactttccctaatctctttctttcagggcaataatgatacaatgtatcatgcctctttgcaccattctaaagaataacagtgataatttctgggttaaggcaatagcaatatttctgcatataaatatttctgcatataaattgtaactgatgtaagaggtttcatattgctaatagcagctacaatccagctaccattctgcttttattttatggttgggataaggctggattattctgagtccaagctaggcccttttgctaatcatgttcatacctcttatcttcctcccacagctcctgggcaacgtgctggtctgtgtgctggcccatcactttggcaaagaattgggatCGTAACTATAACGGTCCTAAGGTAGCGAAATGAGCATCCAAGTCGAGCACCCCGCAGGCGGGTACAAGAAGTTATTTGAAACGGTAGAAGAGCTGTCGTCGCCTCTGACCGCTCATGTAACAGGACGGATACCTCTGTGGTTGACAGGTTCTTTATTACGCTGCGGACCCGGCCTGTTCGAAGTTGGCTCCGAGCCCTTTTACCACCTGTTCGACGGCCAAGCACTGCTCCACAAGTTCGACTTTAAAGAGGGCCACGTGACGTACCATAGAAGGTTCATCAGGACGGATGCTTACGTCCGCGCAATGACGGAAAAGCGGATCGTAATCACGGAGTTCGGGACATGTGCCTTCCCCGACCCCTGTAAGAACATCTTCTCCCGCTTCTTTAGTTACTTTCGGGGCGTGGAGGTTACTGACAATGCCCTGGTTAACGTATACCCTGTCGGGGAAGACTATTACGCCTGCACAGAGACCAACTTCATTACGAAGATCAATCCTGAGACGCTGGAGACCATCAAGCAAGTCGATCTGTGCAATTACGTCTCGGTGAATGGCGCCACCGCGCATCCACACATTGAAAACGACGGCACTGTGTATAATATCGGCAACTGCTTCGGCAAGAACTTCTCGATAGCATACAACATTGTGAAGATCCCACCGCTTCAGGCTGACAAGGAGGACCCCATCTCAAAGTCGGAAATAGTGGTCCAGTTCCCCTGCTCAGACAGGTTCAAACCTAGCTATGTCCACTCGTTTGGTCTGACCCCGAATTATATCGTTTTCGTGGAGACCCCGGTCAAGATTAACCTGTTCAAATTCCTCAGCTCATGGTCCCTCTGGGGCGCAAACTACATGGACTGCTTCGAGTCCAACGAAACAATGGGCGTATGGCTCCATATCGCCGACAAGAAGCGGAAAAAGTACCTGAACAACAAGTACCGCACCTCGCCCTTCAACCTCTTTCATCACATCAACACCTACGAGGACAACGGCTTCCTCATCGTAGACCTCTGCTGCTGGAAGGGCTTCGAGTTTGTCTACAACTACCTGTACCTGGCAAACCTGAGGGAAAACTGGGAAGAGGTCAAAAAGAACGCCCGTAAGGCACCACAACCCGAGGTGCGCCGGTACGTCCTGCCCCTTAACATAGACAAAGCAGACACAGGGAAGAACTTAGTGACTTTGCCTAACACAACCGCGACTGCGATCCTATGTTCCGACGAGACTATCTGGCTGGAGCCTGAGGTGTTATTTTCTGGCCCCAGACAGGCATTCGAGTTTCCCCAGATTAACTATCAGAAGTACTGCGGAAAGCCATACACGTATGCCTACGGTCTCGGCCTGAATCATTTCGTGCCTGACCGCCTGTGTAAGTTGAACGTAAAAACTAAAGAAACCTGGGTGTGGCAGGAGCCCGACTCATACCCTTCCGAGCCCATATTTGTCAGTCACCCTGATGCACTGGAAGAGGACGATGGAGTGGTGTTGTCTGTCGTCGTGAGCCCAGGGGCCGGTCAGAAGCCAGCCTACCTATTGATTCTCAACGCGAAGGACCTGTCTGAGGTCGCGCGGGCGGAGGTCGAAATCAATATCCCCGTTACGTTCCACGGCCTCTTTAAGAAGTCGTAGGGATAACAGGGTAATGTCGACAAGCTTGCTAGCACGGGTGGCATCCCTGTGACCCCTCCCCAGTGCCTCTCCTGGCCCTGGAAGTTGCCACTCCAGTGCCCACCAGCCTTGTCCTAATAAAATTAAGTTGCATCATTTTGTCTGACTAGGTGTCCTTCTATAATATTATGGGGTGGAGGGGGGTGGTATGGAGCAAGGGGCAAGTTGGGAAGACAACCTGTAGGGCCTGCGGGGTCTATTGGGAACCAAGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAATCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTTGTTGGGATTCCAGGCATGCATGACCAGGCTCAGCTAATTTTTGTTTTTTTGGTAGAGACGGGGTTTCACCATATTGGCCAGGCTGGTCTCCAACTCCTAATCTCAGGTGATCTACCCACCTTGGCCTCCCAAATTGCTGGGATTACAGGCGTGAACCACTGCTCCCTTCCCTGTCCTTATGCATGGGCCCGTACGATCACTAGTGTACAGCGGCCGCAGGAACCCCTAGTGATGGAGTTGGCCACTCCCTCTCTGCGCGCTCGCTCGCTCACTGAGGCCGGGCGACCAAAGGTCGCCCGACGCCCGGGCTTTGCCCGGGCGGCCTCAGTGAGCGAGCGAGCGCGCAGCTGCCTGCAGGggcgcctgatgcggtattttctccttacgcatctgtgcggtatttcacaccgcatacgtcaaagcaaccatagtacgcgccctgtagcggcgcattaagcgcggcgggtgtggtggttacgcgcagcgtgaccgctacacttgccagcgccttagcgcccgctcctttcgctttcttcccttcctttctcgccacgttcgccggctttccccgtcaagctctaaatcgggggctccctttagggttccgatttagtgctttacggcacctcgaccccaaaaaacttgatttgggtgatggttcacgtagtgggccatcgccctgatagacggtttttcgccctttgacgttggagtccacgttctttaatagtggactcttgttccaaactggaacaacactcaactctatctcgggctattcttttgatttataagggattttgccgatttcggtctattggttaaaaaatgagctgatttaacaaaaatttaacgcgaattttaacaaaatattaacgtttacaattttatggtgcactctcagtacaatctgctctgatgccgcatagttaagccagccccgacacccgccaacacccgctgacgcgccctgacgggcttgtctgctcccggcatccgcttacagacaagctgtgaccgtctccgggagctgcatgtgtcagaggttttcaccgtcatcaccgaaacgcgcgagacgaaagggcctcgtgatacgcctatttttataggttaatgtcatgataataatggtttcttagacgtcaggtggcacttttcggggaaatgtgcgcggaacccctatttgtttatttttctaaatacattcaaatatgtatccgctcatgagacaataaccctgataaatgcttcaataatattgaaaaaggaagagtatgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcctgtttttgctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgcacgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgccccgaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcccgtattgacgccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttggttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaattatgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatcggaggaccgaaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgccttgatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatgcctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagcttcccggcaacaattaatagactggatggaggcggataaagttgcaggaccacttctgcgctcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtgggtctcgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctacacgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcctcactgattaagcattggtaactgtcagaccaagtttactcatatatactttagattgatttaaaacttcatttttaatttaaaaggatctaggtgaagatcctttttgataatctcatgaccaaaatcccttaacgtgagttttcgttccactgagcgtcagaccccgtagaaaagatcaaaggatcttcttgagatcctttttttctgcgcgtaatctgctgcttgcaaacaaaaaaaccaccgctaccagcggtggtttgtttgccggatcaagagctaccaactctttttccgaaggtaactggcttcagcagagcgcagataccaaatactgttcttctagtgtagccgtagttaggccaccacttcaagaactctgtagcaccgcctacatacctcgctctgctaatcctgttaccagtggctgctgccagtggcgataagtcgtgtcttaccgggttggactcaagacgatagttaccggataaggcgcagcggtcgggctgaacggggggttcgtgcacacagcccagcttggagcgaacgacctacaccgaactgagatacctacagcgtgagctatgagaaagcgccacgcttcccgaagggagaaaggcggacaggtatccggtaagcggcagggtcggaacaggagagcgcacgagggagcttccagggggaaacgcctggtatctttatagtcctgtcgggtttcgccacctctgacttgagcgtcgatttttgtgatgctcgtcaggggggcggagcctatggaaaaacgccagcaacgcggcctttttacggttcctggccttttgctggccttttgctcacatgt"
dottedMeta :: Meta
dottedMeta = Meta { locus=Locus "pAAV-GFP-CellBio" 5374 "ds-DNA" (Just Circular) (Just "SYN") "15-AUG-2016"
, definition=Just $ "."
, accession=Just $ "."
, version=Just $ Version "." Nothing
, keywords=Just "."
, source=Just $ Source "." Nothing
, references=[ Reference "." Nothing Nothing Nothing Nothing
, Reference "." Nothing Nothing Nothing Nothing
]
, comments=["."]
}