Name: biostockholm
Version: 0.1
Synopsis: Reading and writing Stockholm files (multiple sequence alignment, used by Rfam and Infernal).
License: BSD3
License-file: LICENSE
Author: Felipe Lessa
Maintainer: felipe.lessa@gmail.com
Category: Bioinformatics
Build-type: Simple
Cabal-version: >=1.8
Description:
Parsing and pretty printing of files in Stockholm 1.0 format. See:
.
* <http://sonnhammer.sbc.su.se/Stockholm.html>
.
* <ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/relnotes.txt>
.
* <http://en.wikipedia.org/wiki/Stockholm_format>
Source-repository head
Type: darcs
Location: http://patch-tag.com/r/felipe/biostockholm
Library
Hs-Source-Dirs: src
Exposed-modules:
Bio.Sequence.Stockholm
Ghc-Options: -Wall
Build-depends:
base >= 3 && < 5
, containers >= 0.2 && < 0.5
, bytestring == 0.9.*
, deepseq == 1.1.*
, explicit-exception == 0.1.*
, biocore >= 0.1 && < 0.3
Test-suite runtests
Type: exitcode-stdio-1.0
Hs-Source-Dirs: src
Main-is: runtests.hs
Other-modules:
Bio.Sequence.Stockholm
Ghc-Options: -Wall
Cpp-Options: -DTEST
Build-depends:
base >= 3 && < 5
, containers >= 0.2 && < 0.5
, bytestring == 0.9.*
, deepseq == 1.1.*
, explicit-exception == 0.1.*
, biocore >= 0.1 && < 0.3
, hspec == 0.9.*
, HUnit == 1.2.*