a50-0.4: a50.cabal

Name:           a50
Version:        0.4
License:        GPL

Author:         Ketil Malde
Maintainer:     Ketil Malde <ketil@malde.org>

Category:       Bioinformatics
Synopsis:       Compare genome assemblies
Description:    a50 - a simple tool for graphing genome coverage and fragmentation.
                .
                Reads files of contigs, and compares them by plotting each as a line in a graph. 
		The x-axis represents contig number, the y-axis represents total (cumulative) size.
		An ideal assembly contains a few, large contigs, thus this curve should rise steeply, and 
		stop early (but at the expected genome size).  Conversely, a poor assembly consisting of
		many small fragments will have a less steep curve extending far to the right.
		.
		The graphs produced by a50 gives a simple and easy to grasp comparison between assemblies,
		and yet produces a more detailed and informative view than the usual metrics like largest
		contig size or N50.
		.
                The Darcs repository is at <http://malde.org/~ketil/biohaskell/a50>.

HomePage:	http://blog.malde.org/index.php/a50-a-graphical-comparison-of-genome-assemblies
Build-Type:     Simple
Cabal-Version:	>= 1.2.3
Tested-with:    GHC==6.12.1
Data-files:     README

Executable a50
    Main-Is:        A50.hs
    Other-Modules:  Gnuplot, Options, Blat, Sort
    Hs-Source-Dirs: src
    Ghc-Options:    -Wall
    Build-Depends:  base>=3 && <5, bio > 0.4, process, containers, cmdargs >= 0.5, directory