a50-0.2: a50.cabal

Name:           a50
Version:        0.2
License:        GPL

Author:         Ketil Malde
Maintainer:     Ketil Malde <ketil@malde.org>

Category:       Bioinformatics
Synopsis:       Compare genome assemblies
Description:    a50 - a simple tool for graphing genome coverage and fragmentation.
                .
                Reads files of contigs, and compares them by plotting each as a line in a graph. 
		The x-axis represents contig number, the y-axis represents total (cumulative) size.
		An ideal assembly contains a few, large contigs, thus this curve should rise steeply, and 
		stop early (but at the expected genome size).  Conversely, a poor assembly consisting of
		many small fragments will have a less steep curve extending far to the right.
		.
		The graphs produced by a50 gives a simple and easy to grasp comparison between assemblies,
		and yet produces a more detailed and informative view than the usual metrics like largest
		contig size or N50.
		.
                The Darcs repository is at <http://malde.org/~ketil/biohaskell/a50>.

-- HomePage:	http://blog.malde.org/area50
Build-Depends:  base>=3 && <5, bio > 0.4, process, containers, cmdargs >= 0.5, directory
Build-Type:     Simple
Cabal-Version:	>= 1.2.3
Tested-with:    GHC==6.12.1

Data-files:     README
Executable:     a50
Main-Is:        A50.hs
Other-Modules:	Gnuplot, Options, Blat
Hs-Source-Dirs: src
Ghc-Options:    -Wall