name: ViennaRNA-extras
version: 0.0.0.1
author: Christian Hoener zu Siederdissen, 2017
copyright: Christian Hoener zu Siederdissen, 2017
license: BSD3
license-file: LICENSE
category: Bioinformatics
homepage: https://github.com/choener/ViennaRNA-extras
bug-reports: https://github.com/choener/ViennaRNA-extras/issues
maintainer: choener@bioinf.uni-leipzig.de
build-type: Simple
stability: experimental
cabal-version: >= 1.10.0
tested-with: GHC == 8.0.2, GHC == 8.2.1
synopsis: ViennaRNA v2 extensions
description:
Extra functionality on top of the ViennaRNA bindings. Please
note the special license of the ViennaRNA bindings (while the
-extras library is BSD3, it is not very useful without the
bindings)!
.
.
If you use this software, please cite:
.
@
R. Lorenz, S.H. Bernhart, C. Hoener zu Siederdissen, H. Tafer, C. Flamm, P.F. Stadler and I.L. Hofacker (2011)
ViennaRNA Package 2.0
Algorithms for Molecular Biology: 6:26
@
.
<http://www.almob.org/content/6/1/26>
Extra-Source-Files:
README.md
changelog.md
flag debug
description: Enable bounds checking and various other debug operations
default: False
manual: True
library
exposed-modules:
BioInf.ViennaRNA
BioInf.ViennaRNA.Internal
BioInf.ViennaRNA.Parsers.RNAfold
BioInf.ViennaRNA.Parsers.Types
BioInf.ViennaRNA.RNAeval
BioInf.ViennaRNA.RNAfold
BioInf.ViennaRNA.Types
build-depends: base >= 4.7 && < 5.0
, array
, attoparsec >= 0.13
, bytestring
, deepseq >= 1.4
, lens >= 4.0
-- , pipes >= 4.0
, QuickCheck >= 2.0
, streaming >= 0.1
, streaming-bytestring >= 0.1
, strict >= 0.3
, strict-base-types >= 0.5
--
, BiobaseTypes == 0.1.3.*
, BiobaseXNA == 0.10.0.*
, ViennaRNA-bindings == 0.233.2.*
default-language:
Haskell2010
default-extensions: BangPatterns
, DeriveDataTypeable
, DeriveGeneric
, GeneralizedNewtypeDeriving
, OverloadedStrings
, RecordWildCards
, TemplateHaskell
, UnicodeSyntax
ghc-options:
-O2 -funbox-strict-fields
if flag(debug)
-- cpp-options: -DADPFUSION_CHECKS
ghc-options: -fno-ignore-asserts -O0
test-suite properties
type:
exitcode-stdio-1.0
main-is:
properties.hs
ghc-options:
-threaded -rtsopts -with-rtsopts=-N
hs-source-dirs:
tests
default-language:
Haskell2010
default-extensions: BangPatterns
, CPP
, FlexibleContexts
, FlexibleInstances
, MultiParamTypeClasses
, OverloadedStrings
, ScopedTypeVariables
, TemplateHaskell
, TypeFamilies
, TypeOperators
, TypeSynonymInstances
, UnicodeSyntax
build-depends: base
, attoparsec
, bytestring
, QuickCheck
, tasty >= 0.11
, tasty-quickcheck >= 0.8
, tasty-th >= 0.1
, vector
--
, ViennaRNA-extras
-- its a library, get it from hackage
--source-repository this
-- type: git
-- location: git://github.com/choener/ViennaRNA-extras/tree/0.0.0.1
-- tag: 0.0.0.1
source-repository head
type: git
location: git://github.com/choener/ViennaRNA-extras