name: ViennaRNA-bindings
version: 0.1.2.0
synopsis: ViennaRNA v2 bindings
homepage: http://www.tbi.univie.ac.at/~choener/
license: OtherLicense
license-file: LICENSE
author: Christian Hoener zu Siederdissen (bindings) 2013-4, The ViennaRNA Team (library) 1994-2014
maintainer: choener@tbi.univie.ac.at
copyright: The ViennaRNA Team 1994-2014
category: Bioinformatics, FFI
build-type: Simple
cabal-version: >=1.8
description:
Bindings to the ViennaRNA package, version 2.x.y.
.
Only a partial set of bindings is provided. If you need additional functions,
please open an issue on github.
.
The ViennaRNA bindings package now directly provide all necessary
functionality. Please note that this package uses the same license as the
ViennaRNA package.
.
If you use this software, please cite:
.
@
R. Lorenz, S.H. Bernhart, C. Hoener zu Siederdissen, H. Tafer, C. Flamm, P.F. Stadler and I.L. Hofacker (2011)
ViennaRNA Package 2.0
Algorithms for Molecular Biology: 6:26
@
.
<http://www.almob.org/content/6/1/26>
extra-source-files:
cbits/circfold.inc
include/1.8.4_epars.h
include/1.8.4_intloops.h
include/aln_util.h
include/cofold.h
include/config.h
include/data_structures.h
include/energy_const.h
include/energy_par.h
include/fold.h
include/fold_vars.h
include/gquad.h
include/intl11dH.h
include/intl11.h
include/intl21dH.h
include/intl21.h
include/intl22dH.h
include/intl22.h
include/list.h
include/loop_energies.h
include/naview.h
include/pair_mat.h
include/params.h,
include/part_func_co.h
include/part_func.h
include/plot_layouts.h
include/PS_dot.h
include/subopt.h
include/utils.h
changelog
library
exposed-modules:
-- public interfaces
BioInf.ViennaRNA.Bindings
-- the FFI
BioInf.ViennaRNA.Bindings.FFI.CoFold
BioInf.ViennaRNA.Bindings.FFI.Fold
BioInf.ViennaRNA.Bindings.FFI.PartFunc
BioInf.ViennaRNA.Bindings.FFI.Utils
build-depends:
base == 4.* ,
array
build-tools:
c2hs
extra-libraries:
c-sources:
cbits/fold.c
cbits/utils.c
cbits/fold_vars.c
cbits/energy_par.c
cbits/gquad.c
cbits/params.c
cbits/part_func.c
cbits/part_func_co.c
cbits/cofold.c
cbits/ffiwrap_part_func.c
cc-options:
include-dirs: include
includes: config.h