name: SelectSequencesFromMSA
version: 1.0.5
synopsis: Selects a representative subset of sequences from multiple sequence alignment.
description: SelectSequences is a tool for selection of a representative subset of sequences from a multiple sequence alignment in clustal format.
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Optional Dependencies:
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* <https://www.tbi.univie.ac.at/~wash/RNAz/ RNAz>
Installation via cabal-install:
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> cabal install SelectSequencesFromMSA
license: GPL-3
license-file: LICENSE
author: Florian Eggenhofer
maintainer: egg@informatik.uni.freiburg.de
category: Bioinformatics
build-type: Simple
cabal-version: >=1.8
Tested-With: GHC == 7.10.3, GHC == 8.2.2
source-repository head
type: git
location: https://github.com/eggzilla/SelectSequencesFromMSA
source-repository this
type: git
location: https://github.com/eggzilla/SelectSequencesFromMSA/tree/1.0.5
tag: 1.0.5
executable SelectSequencesFromMSA
Hs-Source-Dirs: ./src/Bio/
main-is: SelectSequences.hs
ghc-options: -Wall
build-depends: base >=4.5 && <5, cmdargs, either-unwrap, SelectSequencesFromMSA, directory
Library
Hs-Source-Dirs: ./src/
ghc-options: -Wall -fno-warn-unused-do-bind
build-depends: base >=4.5 && <5, cmdargs, ViennaRNAParser>=1.3.2, process, directory, biofasta, parsec, biocore, bytestring, either-unwrap, containers, ClustalParser>=1.2.3, vector, matrix, filepath, text, transformers, text-metrics
Exposed-Modules: Bio.SelectSequencesLibrary