BiobaseVienna-0.0.2.3: templates/cheader

/*
    Automatically generated using the TurnerParser
    TurnerParser (c) 2008,2009,2010
      Christian Hoener zu Siederdissen, TBI Vienna
      choener (at) tbi.univie.ac.at

    The library enabling this can be found at:
    http://hackage.haskell.org/package/BiobaseVienna
    the program can be found at:
    (sorry, not yet)
    install using cabal: cabal install (sorry, not yet)
*/

/*
     Current free energy parameters are summarized in:

     D.H.Mathews, J. Sabina, M. ZUker, D.H. Turner
     "Expanded sequence dependence of thermodynamic parameters improves
     prediction of RNA secondary structure"
     JMB, 288, pp 911-940, 1999

     Enthalpies taken from:

     A. Walter, D Turner, J Kim, M Lyttle, P M"uller, D Mathews, M Zuker
     "Coaxial stacking of helices enhances binding of oligoribonucleotides.."
     PNAS, 91, pp 9218-9222, 1994

     D.H. Turner, N. Sugimoto, and S.M. Freier.
     "RNA Structure Prediction",
     Ann. Rev. Biophys. Biophys. Chem. 17, 167-192, 1988.

     John A.Jaeger, Douglas H.Turner, and Michael Zuker.
     "Improved predictions of secondary structures for RNA",
     PNAS, 86, 7706-7710, October 1989.

     L. He, R. Kierzek, J. SantaLucia, A.E. Walter, D.H. Turner
     "Nearest-Neighbor Parameters for GU Mismatches...."
     Biochemistry 1991, 30 11124-11132

     A.E. Peritz, R. Kierzek, N, Sugimoto, D.H. Turner
     "Thermodynamic Study of Internal Loops in Oligoribonucleotides..."
     Biochemistry 1991, 30, 6428--6435
*/



#include "energy_const.h"
/*@unused@*/
static char rcsid[] = "$Id: energy_par.c,v 1.6 2004/08/12 12:11:57 ivo Exp $";

#define NST 0     /* Energy for nonstandard stacked pairs */
#define DEF -50   /* Default terminal mismatch, used for I */
                  /* and any non_pairing bases */
#define NSM 0     /* terminal mismatch for non standard pairs */

#define PUBLIC

PUBLIC double Tmeasure = 37+K0;  /* temperature of param measurements */