name: BiobaseTrainingData
version: 0.1.2.3
author: Christian Hoener zu Siederdissen
maintainer: choener@tbi.univie.ac.at
homepage: http://www.tbi.univie.ac.at/~choener/
copyright: Christian Hoener zu Siederdissen, 2011
category: Bioinformatics
synopsis: RNA folding training data
license: GPL-3
license-file: LICENSE
build-type: Simple
stability: experimental
cabal-version: >= 1.6.0
description:
Parameter training for RNA secondary structure prediction tools
requires data to train on. Since there are a number of
different available formats, and handling them all in the
training tools is a pain, we have this library and programs.
"MkTrainingData" transforms different formats and they all
produce a common "training data" format. This format is
Haskell-readable (and only partially human-readable)
line-by-line. Generating additional training data is therefor
easy as one can just "cat" together different training files.
.
Note that several features are designed around /extended/ RNA
secondary structures.
.
Now with some filtering and manipulation options.
library
build-depends:
base >3 && <5,
bytestring,
either-unwrap,
iteratee,
vector,
BiobaseDotP,
BiobaseFR3D,
BiobaseXNA >= 0.5.0.1
exposed-modules:
Biobase.TrainingData
Biobase.TrainingData.Filter
Biobase.TrainingData.Import
Biobase.TrainingData.Manip
ghc-options:
-O2
executable MkTrainingData
build-depends:
cmdargs == 0.8.*
main-is:
MkTrainingData.hs
ghc-options:
-O2