name: BiobaseHTTPTools
version: 1.0.0
synopsis: Tools to query Bioinformatics HTTP services e.g. Entrez, Ensembl.
description: BiobaseHTTP provides tools to interface the Bioinformatics REST services, currently Entrez, Ensembl.
.
Usage instructions can be found in the <https://github.com/eggzilla/BiobaseHTTPTools README>
.
Currently following Tools are included:
.
* FetchSequences:
Retrieves sequence in fasta format
.
* AccessionToTaxId:
Converts NCBI accession number to taxonomy id
.
* GeneIdToGOTerms:
Retrieve GOterms for a Ensembl GeneId
.
* GeneIdToUniProtId
Retrieves UniProtId for a Ensembl GeneId
license: GPL-3
license-file: LICENSE
author: Florian Eggenhofer
maintainer: egg@informatik.uni-freiburg.de
-- copyright:
category: Bioinformatics
build-type: Simple
cabal-version: >=1.8
Tested-With: GHC == 8.4.3
source-repository head
type: git
location: https://github.com/eggzilla/BiobaseHTTPTools
source-repository this
type: git
location: https://github.com/eggzilla/BiobaseHTTPTools/tree/1.1.0
tag: 1.1.0
executable FetchSequence
Hs-Source-Dirs: ./Biobase/
main-is: FetchSequence.hs
ghc-options: -Wall -O2
build-depends: base >=4.5 && <5, cmdargs, BiobaseHTTP>=1.1.0, either-unwrap, BiobaseFasta >=0.2.0.0, bytestring, containers
executable AccessionToTaxId
Hs-Source-Dirs: ./Biobase/
main-is: AccessionToTaxId.hs
ghc-options: -Wall -O2
build-depends: base >=4.5 && <5, cmdargs, BiobaseHTTP>=1.1.0, either-unwrap, bytestring, containers, hxt
executable GeneIdToUniProtId
Hs-Source-Dirs: ./Biobase/
main-is: GeneIdToUniProtId.hs
ghc-options: -Wall -O2
build-depends: base >=4.5 && <5, cmdargs, BiobaseHTTP>=1.1.0, text
executable GeneIdToGOTerms
Hs-Source-Dirs: ./Biobase/
main-is: GeneIdToGOTerms.hs
ghc-options: -Wall -O2
build-depends: base >=4.5 && <5, cmdargs, BiobaseHTTP>=1.1.0, text