BiobaseFR3D-0.2.2.0: BiobaseFR3D.cabal

name:           BiobaseFR3D
version:        0.2.2.0
author:         Christian Hoener zu Siederdissen
maintainer:     choener@tbi.univie.ac.at
homepage:       http://www.tbi.univie.ac.at/~choener/
copyright:      Christian Hoener zu Siederdissen, 2011
category:       Bioinformatics
synopsis:       Importer for FR3D resources
license:        GPL-3
license-file:   LICENSE
build-type:     Simple
stability:      experimental
cabal-version:  >= 1.4.0
description:
                Provides importers for FR3D resource files. Of particular
                interest are basepairs files which describe canonical and
                non-canonical (non-Watson-Crick) base pairings in RNA secondary
                structure.
                .
                The original FR3D paper is:
                .
                FR3D: Finding Local and Composite Recurrent Structural Motifs
                in RNA 3D Structures, Michael Sarver; Craig L. Zirbel; Jesse
                Stombaugh; Ali Mokdad; Neocles B. Leontis. /Journal of
                Mathematical Biology/ (2008) 56:215–252.
                .
                Changes since any 0.1.*:
                .
                * Zero-based indexing (FR3D is one-based!) for sequence
                  positions. We do not change the nucleotide PDB number.
                .
                * Some sanity checks, a number of FR3D files fall through at
                  this and need to be checked for consistency



extra-source-files:

library
  build-depends:
    base >3 && <5,
    bytestring,
    containers,
    filemanip,
    iteratee,
    BiobaseXNA >= 0.5.5

  exposed-modules:
    Biobase.FR3D
    Biobase.FR3D.Import

  ghc-options:
    -O2