name: AlignmentAlgorithms
version: 0.0.2.0
author: Christian Hoener zu Siederdissen, 2013-2015
copyright: Christian Hoener zu Siederdissen, 2013-2015
homepage: https://github.com/choener/AlignmentAlgorithms
bug-reports: https://github.com/choener/AlignmentAlgorithms/issues
maintainer: choener@bioinf.uni-leipzig.de
category: Algorithms, Data Structures, Bioinformatics, Linguistics
license: GPL-3
license-file: LICENSE
build-type: Simple
stability: experimental
cabal-version: >= 1.10.0
tested-with: GHC == 7.8.4, GHC == 7.10.1
synopsis: Collection of alignment algorithms
description:
<http://www.bioinf.uni-leipzig.de/Software/gADP/ generalized Algebraic Dynamic Programming>
.
A selection of (sequence) alignment algorithms. Both terminal,
and syntactic variables, as well as the index type is not fixed
here. This makes it possible to select the correct structure of
the grammar here, but bind the required data type for alignment
in user code.
.
That being said, these algorithms are mostly aimed towards
sequence alignment problems.
.
List of grammars:
.
* global alignment (Needleman-Wunsch style)
.
Extra-Source-Files:
README.md
changelog.md
library
build-depends: base >= 4.7 && < 4.9
, ADPfusion >= 0.4.0.2 && < 0.4.2
, containers >= 0.5 && < 0.6
, fmlist >= 0.9 && < 0.10
, FormalGrammars >= 0.2.1 && < 0.2.2
, GrammarProducts >= 0.1.1 && < 0.1.2
, PrimitiveArray >= 0.6.0 && < 0.6.2
, vector >= 0.10 && < 0.11
exposed-modules:
DP.Alignment.Global.Tapes2
default-language:
Haskell2010
default-extensions: BangPatterns
, FlexibleContexts
, FlexibleInstances
, MultiParamTypeClasses
, QuasiQuotes
, TemplateHaskell
, TypeFamilies
ghc-options:
-O2 -funbox-strict-fields
source-repository head
type: git
location: git://github.com/choener/AlignmentAlgorithms