diff --git a/too-many-cells.cabal b/too-many-cells.cabal --- a/too-many-cells.cabal +++ b/too-many-cells.cabal @@ -1,129 +1,132 @@ -name: too-many-cells -version: 0.1.0.0 -synopsis: Cluster single cells and analyze cell clade relationships. -description: Different methods to cluster and analyze single cell data with diversity indices and differential expression. -homepage: http://github.com/GregorySchwartz/too-many-cells#readme -license: GPL-3 -license-file: LICENSE -author: Gregory W. Schwartz -maintainer: gsch@pennmedicine.upenn.edu -copyright: 2018 Gregory W. Schwartz -category: Bioinformatics -build-type: Simple --- extra-source-files: -cabal-version: >=1.10 +cabal-version: >=1.10 +name: too-many-cells +version: 0.1.0.1 +license: GPL-3 +license-file: LICENSE +copyright: 2018 Gregory W. Schwartz +maintainer: gsch@pennmedicine.upenn.edu +author: Gregory W. Schwartz +homepage: http://github.com/GregorySchwartz/too-many-cells#readme +synopsis: Cluster single cells and analyze cell clade relationships. +description: + Different methods to cluster and analyze single cell data with diversity indices and differential expression. +category: Bioinformatics +build-type: Simple +source-repository head + type: git + location: https://github.com/GregorySchwartz/too-many-cells + library - hs-source-dirs: src - exposed-modules: TooManyCells.Diversity.Diversity - , TooManyCells.Differential.Differential - , TooManyCells.Differential.Types - , TooManyCells.Diversity.Load - , TooManyCells.Diversity.Plot - , TooManyCells.Diversity.Types - , TooManyCells.File.Types - , TooManyCells.MakeTree.Adjacency - , TooManyCells.MakeTree.Clumpiness - , TooManyCells.MakeTree.Cluster - , TooManyCells.MakeTree.Load - , TooManyCells.MakeTree.Plot - , TooManyCells.MakeTree.Print - , TooManyCells.MakeTree.Types - , TooManyCells.Matrix.Load - , TooManyCells.Matrix.Preprocess - , TooManyCells.Matrix.Types - , TooManyCells.Matrix.Utility - , TooManyCells.Paths.Distance - , TooManyCells.Paths.Plot - , TooManyCells.Paths.Types - build-depends: base >= 4.7 && < 5 - , aeson - , birch-beer - , bytestring - , cassava - , colour - , containers - , deepseq - , diagrams - , diagrams-lib - , diagrams-cairo - , diagrams-graphviz - , differential - , directory - , diversity - , find-clumpiness - , filepath - , fgl - , foldl - , graphviz - , hierarchical-clustering - , hierarchical-spectral-clustering - , hmatrix - , inline-r - , lens - , managed - , matrix-market-attoparsec - , mltool - , modularity - , mtl - , palette - , parallel - , plots - , safe - , scientific - , sparse-linear-algebra - , split - , statistics - , streaming - , streaming-bytestring - , streaming-cassava - , streaming-with - , SVGFonts - , text - , text-show - , vector - , vector-algorithms - ghc-options: -O2 - default-language: Haskell2010 + exposed-modules: + TooManyCells.Diversity.Diversity + TooManyCells.Differential.Differential + TooManyCells.Differential.Types + TooManyCells.Diversity.Load + TooManyCells.Diversity.Plot + TooManyCells.Diversity.Types + TooManyCells.File.Types + TooManyCells.MakeTree.Adjacency + TooManyCells.MakeTree.Clumpiness + TooManyCells.MakeTree.Cluster + TooManyCells.MakeTree.Load + TooManyCells.MakeTree.Plot + TooManyCells.MakeTree.Print + TooManyCells.MakeTree.Types + TooManyCells.Matrix.Load + TooManyCells.Matrix.Preprocess + TooManyCells.Matrix.Types + TooManyCells.Matrix.Utility + TooManyCells.Paths.Distance + TooManyCells.Paths.Plot + TooManyCells.Paths.Types + hs-source-dirs: src + default-language: Haskell2010 + ghc-options: -O2 + build-depends: + base >=4.7 && <5, + aeson >=1.4.0.0, + birch-beer >=0.1.0.0, + bytestring >=0.10.8.2, + cassava >=0.5.1.0, + colour >=2.3.4, + containers >=0.5.11.0, + deepseq >=1.4.3.0, + diagrams >=1.4, + diagrams-lib >=1.4.2.3, + diagrams-cairo >=1.4.1, + diagrams-graphviz >=1.4.1, + differential >=0.1.1.0, + directory >=1.3.1.5, + diversity >=0.8.1.0, + find-clumpiness >=0.2.3.1, + filepath >=1.4.2, + fgl >=5.6.0.0, + foldl >=1.4.2, + graphviz >=2999.20.0.2, + hierarchical-clustering >=0.4.6, + hierarchical-spectral-clustering >=0.2.1.0, + hmatrix >=0.19.0.0, + inline-r >=0.9.2, + lens >=4.16.1, + managed >=1.0.6, + matrix-market-attoparsec >=0.1.0.8, + mltool >=0.2.0.1, + modularity >=0.2.0.3, + mtl >=2.2.2, + palette >=0.3.0.1, + parallel >=3.2.1.1, + plots >=0.1.0.2, + safe >=0.3.17, + scientific >=0.3.6.2, + sparse-linear-algebra >=0.3.1, + split >=0.2.3.3, + statistics >=0.14.0.2, + streaming >=0.2.1.0, + streaming-bytestring >=0.1.6, + streaming-cassava >=0.1.0.1, + streaming-with >=0.2.2.1, + SVGFonts >=1.6.0.3, + text >=1.2.3.0, + text-show >=3.7.4, + vector >=0.12.0.1, + vector-algorithms >=0.7.0.1 executable too-many-cells - hs-source-dirs: app - main-is: Main.hs - ghc-options: -threaded -rtsopts -O2 - build-depends: base - , too-many-cells - , aeson - , birch-beer - , bytestring - , cassava - , colour - , containers - , diagrams-lib - , diagrams-cairo - , directory - , fgl - , filepath - , find-clumpiness - , graphviz - , hierarchical-spectral-clustering - , inline-r - , lens - , matrix-market-attoparsec - , mtl - , optparse-generic - , palette - , plots - , spectral-clustering - , streaming - , streaming-bytestring - , streaming-utils - , terminal-progress-bar - , text - , text-show - , transformers - , vector - default-language: Haskell2010 - -source-repository head - type: git - location: https://github.com/GregorySchwartz/too-many-cells + main-is: Main.hs + hs-source-dirs: app + default-language: Haskell2010 + ghc-options: -threaded -rtsopts -O2 + build-depends: + base >=4.11.1.0, + too-many-cells -any, + aeson >=1.4.0.0, + birch-beer >=0.1.0.0, + bytestring >=0.10.8.2, + cassava >=0.5.1.0, + colour >=2.3.4, + containers >=0.5.11.0, + diagrams-lib >=1.4.2.3, + diagrams-cairo >=1.4.1, + directory >=1.3.1.5, + fgl >=5.6.0.0, + filepath >=1.4.2, + find-clumpiness >=0.2.3.1, + graphviz >=2999.20.0.2, + hierarchical-spectral-clustering >=0.2.1.0, + inline-r >=0.9.2, + lens >=4.16.1, + matrix-market-attoparsec >=0.1.0.8, + mtl >=2.2.2, + optparse-generic >=1.3.0, + palette >=0.3.0.1, + plots >=0.1.0.2, + spectral-clustering >=0.2.1.2, + streaming >=0.2.1.0, + streaming-bytestring >=0.1.6, + streaming-utils >=0.1.4.7, + terminal-progress-bar >=0.2, + text >=1.2.3.0, + text-show >=3.7.4, + transformers >=0.5.5.0, + vector >=0.12.0.1