diff --git a/app/Main.hs b/app/Main.hs --- a/app/Main.hs +++ b/app/Main.hs @@ -1,7 +1,7 @@ -- | -- Module : Main -- Description : Work with phylogenetic trees --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/TLynx/Compare/Compare.hs b/src/TLynx/Compare/Compare.hs --- a/src/TLynx/Compare/Compare.hs +++ b/src/TLynx/Compare/Compare.hs @@ -4,7 +4,7 @@ -- | -- Module : TLynx.Compare.Compare -- Description : Compare two phylogenies --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/TLynx/Compare/Options.hs b/src/TLynx/Compare/Options.hs --- a/src/TLynx/Compare/Options.hs +++ b/src/TLynx/Compare/Options.hs @@ -3,7 +3,7 @@ -- | -- Module : TLynx.Compare.Options -- Description : Options for the compare subcommand --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/TLynx/Connect/Connect.hs b/src/TLynx/Connect/Connect.hs --- a/src/TLynx/Connect/Connect.hs +++ b/src/TLynx/Connect/Connect.hs @@ -4,7 +4,7 @@ -- | -- Module : TLynx.Connect.Connect -- Description : Connect two phylogenies --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/TLynx/Connect/Options.hs b/src/TLynx/Connect/Options.hs --- a/src/TLynx/Connect/Options.hs +++ b/src/TLynx/Connect/Options.hs @@ -3,7 +3,7 @@ -- | -- Module : TLynx.Connect.Options -- Description : Options for the connect subcommand --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/TLynx/Distance/Distance.hs b/src/TLynx/Distance/Distance.hs --- a/src/TLynx/Distance/Distance.hs +++ b/src/TLynx/Distance/Distance.hs @@ -3,7 +3,7 @@ -- | -- Description : Compute distances between trees --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/TLynx/Distance/Options.hs b/src/TLynx/Distance/Options.hs --- a/src/TLynx/Distance/Options.hs +++ b/src/TLynx/Distance/Options.hs @@ -4,7 +4,7 @@ -- | -- Module : TLynx.Distance.Options -- Description : Options of tree-dist --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/TLynx/Examine/Examine.hs b/src/TLynx/Examine/Examine.hs --- a/src/TLynx/Examine/Examine.hs +++ b/src/TLynx/Examine/Examine.hs @@ -3,7 +3,7 @@ -- | -- Description : Analyze trees --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/TLynx/Examine/Options.hs b/src/TLynx/Examine/Options.hs --- a/src/TLynx/Examine/Options.hs +++ b/src/TLynx/Examine/Options.hs @@ -3,7 +3,7 @@ -- | -- Module : TLynx.Examine.Options -- Description : Tree analysis options --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/TLynx/Options.hs b/src/TLynx/Options.hs --- a/src/TLynx/Options.hs +++ b/src/TLynx/Options.hs @@ -3,7 +3,7 @@ -- | -- Module : TLynx.Options -- Description : TLynx general options --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/TLynx/Parsers.hs b/src/TLynx/Parsers.hs --- a/src/TLynx/Parsers.hs +++ b/src/TLynx/Parsers.hs @@ -1,7 +1,7 @@ -- | -- Module : TLynx.Parsers -- Description : Parse Newick/Nexus tree files --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/TLynx/Shuffle/Options.hs b/src/TLynx/Shuffle/Options.hs --- a/src/TLynx/Shuffle/Options.hs +++ b/src/TLynx/Shuffle/Options.hs @@ -3,7 +3,7 @@ -- | -- Module : TLynx.Shuffle.Options -- Description : Options for the connect subcommand --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/TLynx/Shuffle/Shuffle.hs b/src/TLynx/Shuffle/Shuffle.hs --- a/src/TLynx/Shuffle/Shuffle.hs +++ b/src/TLynx/Shuffle/Shuffle.hs @@ -4,7 +4,7 @@ -- | -- Module : TLynx.Shuffle.Shuffle -- Description : Shuffle a phylogeny --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/TLynx/Simulate/Options.hs b/src/TLynx/Simulate/Options.hs --- a/src/TLynx/Simulate/Options.hs +++ b/src/TLynx/Simulate/Options.hs @@ -6,7 +6,7 @@ -- | -- Module : TLynx.Simulate.Options -- Description : Argument parser for seq-ana --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/TLynx/Simulate/Simulate.hs b/src/TLynx/Simulate/Simulate.hs --- a/src/TLynx/Simulate/Simulate.hs +++ b/src/TLynx/Simulate/Simulate.hs @@ -4,7 +4,7 @@ -- | -- Description : Simulate reconstructed trees --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/TLynx/TLynx.hs b/src/TLynx/TLynx.hs --- a/src/TLynx/TLynx.hs +++ b/src/TLynx/TLynx.hs @@ -1,7 +1,7 @@ -- | -- Module : TLynx.TLynx -- Description : TLynx module --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/tlynx.cabal b/tlynx.cabal --- a/tlynx.cabal +++ b/tlynx.cabal @@ -1,9 +1,9 @@ cabal-version: 2.2 name: tlynx -version: 0.5.1.0 +version: 0.5.1.1 license: GPL-3.0-or-later license-file: LICENSE -copyright: Dominik Schrempf (2020) +copyright: Dominik Schrempf (2021) maintainer: dominik.schrempf@gmail.com author: Dominik Schrempf homepage: https://github.com/dschrempf/elynx#readme @@ -52,12 +52,12 @@ bytestring >=0.10.12.0, comonad >=5.0.8, containers >=0.6.2.1, - elynx-tools >=0.5.1.0, - elynx-tree >=0.5.1.0, + elynx-tools >=0.5.1.1, + elynx-tree >=0.5.1.1, gnuplot >=0.5.6.1, lifted-async >=0.10.2, monad-logger >=0.3.36, - mwc-random >=0.14.0.0, + mwc-random >=0.15.0.1, optparse-applicative >=0.16.1.0, parallel >=3.2.2.0, statistics >=0.15.2.0,