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slynx 0.7.2.2 → 0.8.0.0

raw patch · 4 files changed

+12/−7 lines, 4 filesPVP ok

version bump matches the API change (PVP)

API changes (from Hackage documentation)

Files

ChangeLog.md view
@@ -5,6 +5,11 @@ ## Unreleased changes  +## Version 0.8.0.0++-   Adapt to breaking changes in upstream libraries (`data-default`).++ ## Version 0.7.2.0  -   `slynx`: Allow global normalization of mixture models.
README.md view
@@ -2,7 +2,7 @@  # The ELynx Suite -Version: 0.7.2.1.+Version: 0.8.0.0. Reproducible evolution made easy.  <p align="center"><img src="https://travis-ci.org/dschrempf/elynx.svg?branch=master"/></p>@@ -73,9 +73,9 @@     # OR: stack exec slynx -- --help     # OR: slynx --help -    ELynx Suite version 0.7.2.1.+    ELynx Suite version 0.8.0.0.     Developed by Dominik Schrempf.-    Compiled on June 15, 2023, at 19:54 pm, UTC.+    Compiled on October 27, 2024, at 07:14 am, UTC.          Usage: slynx [-v|--verbosity VALUE] [-o|--output-file-basename NAME]                  [-f|--force] [--no-elynx-file] COMMAND@@ -143,9 +143,9 @@     # OR: stack exec slynx -- simulate --help     # OR: slynx simulate --help -    ELynx Suite version 0.7.2.1.+    ELynx Suite version 0.8.0.0.     Developed by Dominik Schrempf.-    Compiled on June 15, 2023, at 19:54 pm, UTC.+    Compiled on October 27, 2024, at 07:14 am, UTC.          Usage: slynx simulate (-t|--tree-file Name) [-s|--substitution-model MODEL]                           [-m|--mixture-model MODEL] [-n|--global-normalization]
slynx.cabal view
@@ -1,6 +1,6 @@ cabal-version:      3.0 name:               slynx-version:            0.7.2.2+version:            0.8.0.0 synopsis:           Handle molecular sequences description:   Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on GitHub at <https://github.com/dschrempf/elynx>.
src/SLynx/Simulate/Simulate.hs view
@@ -159,7 +159,7 @@     v = BL.pack val  -- | Examine branches of a tree.-summarizeLengths :: HasLength e => Tree e a -> BL.ByteString+summarizeLengths :: (HasLength e) => Tree e a -> BL.ByteString summarizeLengths t =   BL.intercalate     "\n"