diff --git a/app/Main.hs b/app/Main.hs --- a/app/Main.hs +++ b/app/Main.hs @@ -1,7 +1,7 @@ -- | -- Module : Main -- Description : Work with molecular sequence data --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/slynx.cabal b/slynx.cabal --- a/slynx.cabal +++ b/slynx.cabal @@ -1,9 +1,9 @@ cabal-version: 2.2 name: slynx -version: 0.5.1.0 +version: 0.5.1.1 license: GPL-3.0-or-later license-file: LICENSE -copyright: Dominik Schrempf (2020) +copyright: Dominik Schrempf (2021) maintainer: dominik.schrempf@gmail.com author: Dominik Schrempf homepage: https://github.com/dschrempf/elynx#readme @@ -51,13 +51,13 @@ base >=4.7 && <5, bytestring >=0.10.12.0, containers >=0.6.2.1, - elynx-markov >=0.5.1.0, - elynx-seq >=0.5.1.0, - elynx-tools >=0.5.1.0, - elynx-tree >=0.5.1.0, + elynx-markov >=0.5.1.1, + elynx-seq >=0.5.1.1, + elynx-tools >=0.5.1.1, + elynx-tree >=0.5.1.1, hmatrix >=0.20.2, monad-logger >=0.3.36, - mwc-random >=0.14.0.0, + mwc-random >=0.15.0.1, optparse-applicative >=0.16.1.0, statistics >=0.15.2.0, text >=1.2.4.1, diff --git a/src/SLynx/Concatenate/Concatenate.hs b/src/SLynx/Concatenate/Concatenate.hs --- a/src/SLynx/Concatenate/Concatenate.hs +++ b/src/SLynx/Concatenate/Concatenate.hs @@ -4,7 +4,7 @@ -- | -- Module : Analyze.Analyze -- Description : Parse sequence file formats and analyze them --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/SLynx/Concatenate/Options.hs b/src/SLynx/Concatenate/Options.hs --- a/src/SLynx/Concatenate/Options.hs +++ b/src/SLynx/Concatenate/Options.hs @@ -3,7 +3,7 @@ -- | -- Module : SLynx.Concatenate.Options -- Description : ELynxSeq argument parsing --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/SLynx/Examine/Examine.hs b/src/SLynx/Examine/Examine.hs --- a/src/SLynx/Examine/Examine.hs +++ b/src/SLynx/Examine/Examine.hs @@ -5,7 +5,7 @@ -- -- Module : Analyze.Analyze -- Description : Parse sequence file formats and analyze them --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/SLynx/Examine/Options.hs b/src/SLynx/Examine/Options.hs --- a/src/SLynx/Examine/Options.hs +++ b/src/SLynx/Examine/Options.hs @@ -3,7 +3,7 @@ -- | -- Module : SLynx.Examine.Options -- Description : ELynxSeq argument parsing --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/SLynx/Filter/Filter.hs b/src/SLynx/Filter/Filter.hs --- a/src/SLynx/Filter/Filter.hs +++ b/src/SLynx/Filter/Filter.hs @@ -4,7 +4,7 @@ -- | -- Module : Analyze.Analyze -- Description : Parse sequence file formats and analyze them --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/SLynx/Filter/Options.hs b/src/SLynx/Filter/Options.hs --- a/src/SLynx/Filter/Options.hs +++ b/src/SLynx/Filter/Options.hs @@ -3,7 +3,7 @@ -- | -- Module : SLynx.Filter.Options -- Description : ELynxSeq argument parsing --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/SLynx/Options.hs b/src/SLynx/Options.hs --- a/src/SLynx/Options.hs +++ b/src/SLynx/Options.hs @@ -3,7 +3,7 @@ -- | -- Module : SLynx.Options -- Description : SLynx general options --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/SLynx/SLynx.hs b/src/SLynx/SLynx.hs --- a/src/SLynx/SLynx.hs +++ b/src/SLynx/SLynx.hs @@ -1,7 +1,7 @@ -- | -- Module : SLynx.SLynx -- Description : SLynx module --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/SLynx/Simulate/Options.hs b/src/SLynx/Simulate/Options.hs --- a/src/SLynx/Simulate/Options.hs +++ b/src/SLynx/Simulate/Options.hs @@ -3,7 +3,7 @@ -- | -- Module : SLynx.Simulate.Options -- Description : ELynxSim argument parsing --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/SLynx/Simulate/PhyloModel.hs b/src/SLynx/Simulate/PhyloModel.hs --- a/src/SLynx/Simulate/PhyloModel.hs +++ b/src/SLynx/Simulate/PhyloModel.hs @@ -3,7 +3,7 @@ -- | -- Module : SLynx.Simulate.PhyloModel -- Description : Parse and interpret the model string --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/SLynx/Simulate/Simulate.hs b/src/SLynx/Simulate/Simulate.hs --- a/src/SLynx/Simulate/Simulate.hs +++ b/src/SLynx/Simulate/Simulate.hs @@ -4,7 +4,7 @@ -- | -- Module : SLynx.Simulate.Simulate -- Description : Simulate multiple sequence alignments --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/SLynx/SubSample/Options.hs b/src/SLynx/SubSample/Options.hs --- a/src/SLynx/SubSample/Options.hs +++ b/src/SLynx/SubSample/Options.hs @@ -3,7 +3,7 @@ -- | -- Module : SLynx.SubSample.Options -- Description : ELynxSeq argument parsing --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/SLynx/SubSample/SubSample.hs b/src/SLynx/SubSample/SubSample.hs --- a/src/SLynx/SubSample/SubSample.hs +++ b/src/SLynx/SubSample/SubSample.hs @@ -4,7 +4,7 @@ -- | -- Module : Analyze.Analyze -- Description : Parse sequence file formats and analyze them --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/SLynx/Tools.hs b/src/SLynx/Tools.hs --- a/src/SLynx/Tools.hs +++ b/src/SLynx/Tools.hs @@ -4,7 +4,7 @@ -- | -- Module : SLynx.Tools -- Description : Common tools for sequence lynx --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/SLynx/Translate/Options.hs b/src/SLynx/Translate/Options.hs --- a/src/SLynx/Translate/Options.hs +++ b/src/SLynx/Translate/Options.hs @@ -3,7 +3,7 @@ -- | -- Module : SLynx.Translate.Options -- Description : ELynxSeq argument parsing --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/SLynx/Translate/Translate.hs b/src/SLynx/Translate/Translate.hs --- a/src/SLynx/Translate/Translate.hs +++ b/src/SLynx/Translate/Translate.hs @@ -4,7 +4,7 @@ -- | -- Module : Analyze.Analyze -- Description : Parse sequence file formats and analyze them --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com