packages feed

sequence-formats 1.5.1 → 1.5.1.1

raw patch · 5 files changed

+23/−1 lines, 5 filesPVP ok

version bump matches the API change (PVP)

API changes (from Hackage documentation)

Files

sequence-formats.cabal view
@@ -1,5 +1,5 @@ name:                sequence-formats-version:             1.5.1+version:             1.5.1.1 synopsis:            A package with basic parsing utilities for several Bioinformatic data formats. description:         Contains utilities to parse and write Eigenstrat, Fasta, FreqSum, VCF, Plink and other file formats used in population genetics analyses. license:             GPL-3@@ -23,6 +23,10 @@                      testDat/example.snp,                      testDat/example.vcf,                      testDat/example.pileup+                     testDat/example.fam+                     testDat/example.plink.bed+                     testDat/example.plink.fam+                     testDat/example.plink.bim  library   exposed-modules:     SequenceFormats.RareAlleleHistogram,
+ testDat/example.fam view
@@ -0,0 +1,5 @@+     1      SAMPLE0 0 0 2 2+     2      SAMPLE1 0 0 1 2+     3      SAMPLE2 0 0 2 1+     4      SAMPLE3 0 0 1 1+     5      SAMPLE4 0 0 2 1
+ testDat/example.plink.bed view
@@ -0,0 +1,1 @@+l꫋¨èª/¨è«¯ª «
+ testDat/example.plink.bim view
@@ -0,0 +1,7 @@+11       rs0000     0.000000            0 A C+11       rs1111     0.001000       100000 A G+11       rs2222     0.002000       200000 A T+11       rs3333     0.003000       300000 C A+11       rs4444     0.004000       400000 G A+11       rs5555     0.005000       500000 T A+11       rs6666     0.006000       600000 G T
+ testDat/example.plink.fam view
@@ -0,0 +1,5 @@+     1      SAMPLE0 0 0 2 2+     2      SAMPLE1 0 0 1 2+     3      SAMPLE2 0 0 2 1+     4      SAMPLE3 0 0 1 1+     5      SAMPLE4 0 0 2 1