sequence-formats 1.5.1.2 → 1.5.1.3
raw patch · 3 files changed
+5/−3 lines, 3 filesPVP ok
version bump matches the API change (PVP)
API changes (from Hackage documentation)
Files
- Changelog.md +2/−0
- sequence-formats.cabal +1/−1
- src/SequenceFormats/Plink.hs +2/−2
Changelog.md view
@@ -1,3 +1,5 @@+V 1.5.1.3: added possibility to parse allele names 01234 in bim files.+ V 1.5.1.2: added readPlink to export list of Plink module. V 1.5.1: minor updates for hackage
sequence-formats.cabal view
@@ -1,5 +1,5 @@ name: sequence-formats-version: 1.5.1.2+version: 1.5.1.3 synopsis: A package with basic parsing utilities for several Bioinformatic data formats. description: Contains utilities to parse and write Eigenstrat, Fasta, FreqSum, VCF, Plink and other file formats used in population genetics analyses. license: GPL-3
src/SequenceFormats/Plink.hs view
@@ -36,8 +36,8 @@ snpId_ <- A.skipMany1 A.space >> word geneticPos <- A.skipMany1 A.space >> A.double pos <- A.skipMany1 A.space >> A.decimal- ref <- A.skipMany1 A.space >> A.satisfy (A.inClass "ACTGN")- alt <- A.skipMany1 A.space >> A.satisfy (A.inClass "ACTGX")+ ref <- A.skipMany1 A.space >> A.satisfy (A.inClass "ACTGN01234")+ alt <- A.skipMany1 A.space >> A.satisfy (A.inClass "ACTGX01234") void A.endOfLine return $ EigenstratSnpEntry (Chrom chrom) pos geneticPos snpId_ ref alt