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sequence-formats 1.4.0 → 1.4.0.1

raw patch · 3 files changed

+7/−1 lines, 3 filesPVP ok

version bump matches the API change (PVP)

API changes (from Hackage documentation)

Files

Changelog.md view
@@ -32,3 +32,5 @@     - Chromosomes now include X, Y and MT (or chrX, chrY, chrMT), in that order after chr22.      - SNP rsId information is now internally included as an option in the FreqSum data format.     - Pileup Format now also records strand orientation++V 1.4.0.1: Added test file example.pileup to cabal extra-source-files to make tests work.
sequence-formats.cabal view
@@ -1,6 +1,6 @@ cabal-version: >=1.10 name: sequence-formats-version: 1.4.0+version: 1.4.0.1 license: GPL-3 license-file: LICENSE maintainer: stephan.schiffels@mac.com@@ -21,6 +21,7 @@     testDat/example.ind     testDat/example.snp     testDat/example.vcf+    testDat/example.pileup  library     exposed-modules:
+ testDat/example.pileup view
@@ -0,0 +1,3 @@+1 1000 A 4 ..,C*. IIII 3 ..ac* III 8 ,,.,ccAA-3acccA IIIIIIII+1 2000 C 4 ..C+4IIIIa IIII 3 ACt..* III 8 .a.a.C.C* IIIIIIII+2 1000 G 4 ,,.,,..-3AccC*. IIII 3 .,,* III 8 .,,.,,* IIIIIIII