seqloc 0.5 → 0.5.0.2

raw patch · 2 files changed

+9/−6 lines, 2 files

Files

• seqloc.cabal +8/−5
• src/Bio/SeqLoc/Transcript.hs +1/−1

@@ -1,17 +1,20 @@ Name:                seqloc-Version:             0.5-Cabal-Version:       >= 1.2+Version:             0.5.0.2+Cabal-Version:       >= 1.6 Synopsis:            Handle sequence locations for bioinformatics Description:         Handle sequence locations for bioinformatics-Homepage:            http://www.ingolia-lab.org/software/seqloc/+Homepage:            http://www.ingolia-lab.org/seqloc-tutorial.html License:             MIT License-file:        LICENSE Author:              Nick Ingolia Maintainer:          nick@ingolia.org Build-Type:          Simple-Cabal-Version:       >= 1.4- Category:            Bioinformatics++Source-Repository head+  type: git+  location: http://github.com/ingolia/seqloc+  subdir: seqloc  Flag Tests   Description: Build test program

@@ -97,7 +97,7 @@   where utr3loc cdsloc = case Loc.endPos cdsloc of           (Pos.Pos endoff Plus) | endoff < trxlast -> Just $! Loc.fromBoundsStrand (endoff + 1) trxlast Plus           _ -> Nothing-        trxlast = snd . Loc.bounds . unOnSeq . location $ trx+        trxlast = (Loc.length . unOnSeq . location $ trx) - 1  -- | Genomic location of CDS within the transcript cdsLocation :: Transcript -> Maybe SpliceSeqLoc