hyraxAbif 0.2.4.2 → 0.2.4.4

raw patch · 14 files changed

+27/−27 lines, 14 filesdep +versetdep −protoludedep ~binarydep ~bytestringdep ~filepathPVP ok

version bump matches the API change (PVP)

Dependencies added: verset

Dependencies removed: protolude

Dependency ranges changed: binary, bytestring, filepath, hedgehog, hscolour, text

API changes (from Hackage documentation)

Files

• app/Main.hs +1/−1
• hyraxAbif.cabal +12/−12
• src/Examples/AddComment.hs +1/−1
• src/Examples/ReadAb1.hs +1/−1
• src/Examples/RemoveComments.hs +1/−1
• src/Hyrax/Abif.hs +1/−1
• src/Hyrax/Abif/Fasta.hs +1/−1
• src/Hyrax/Abif/Generate.hs +1/−1
• src/Hyrax/Abif/Read.hs +2/−2
• src/Hyrax/Abif/Write.hs +1/−1
• test/AbifTests.hs +2/−2
• test/FastaTests.hs +1/−1
• test/Generators.hs +1/−1
• test/Tests.hs +1/−1

@@ -4,7 +4,7 @@  module Main where -import           Protolude+import           Verset import qualified Data.Text as Txt import qualified Data.ByteString.Lazy as BSL import           Text.Show.Pretty (ppShow)

@@ -1,6 +1,6 @@ cabal-version:       2.2 name:                hyraxAbif-version:             0.2.4.2+version:             0.2.4.4 synopsis:            Modules for parsing, generating and manipulating AB1 files. homepage:            https://github.com/hyraxbio/hyraxAbif/#readme license:             BSD-3-Clause OR Apache-2.0@@ -43,14 +43,14 @@                      , Examples.RemoveComments                      , Examples.ReadAb1   build-depends:       base            >= 4.9.1.0 && < 5-                     , protolude       >= 0.3.0 && < 0.4-                     , binary          >= 0.8.8 && < 0.9-                     , bytestring      >= 0.10.12 && < 0.12+                     , verset          >= 0.0.1.8 && < 0.0.2.0+                     , binary          >= 0.8.9 && < 0.9+                     , bytestring      >= 0.11.3 && < 0.12                      , directory       >= 1.3.6 && < 1.4                      , filepath        >= 1.4.2 && < 1.5                      , hscolour        >= 1.24.4 && < 1.25                      , pretty-show     >= 1.10 && < 1.11-                     , text            >= 1.2.4 && < 1.3+                     , text            >= 1.2.5 && < 2.1   default-language:    Haskell2010  @@ -60,9 +60,9 @@   ghc-options:         -threaded -rtsopts -with-rtsopts=-N -Wall -Wincomplete-uni-patterns -Wincomplete-record-updates -Wimplicit-prelude -Wcompat -Wredundant-constraints -Wnoncanonical-monad-instances   build-depends:       base            >= 4.9.1.0 && < 5                      , hyraxAbif-                     , protolude       >= 0.3.0 && < 0.4-                     , text            >= 1.2.4 && < 1.3-                     , bytestring      >= 0.10.12 && < 0.12+                     , verset          >= 0.0.1.8 && < 0.0.2.0+                     , text            >= 1.2.5 && < 2.1+                     , bytestring      >= 0.11.3 && < 0.12                      , pretty-show     >= 1.10 && < 1.11                      , hscolour        >= 1.24.4 && < 1.25   default-language:    Haskell2010@@ -73,10 +73,10 @@   main-is:             Tests.hs   build-depends:       base            >= 4.9.1.0  && < 5                      , hyraxAbif-                     , protolude       >= 0.3.0 && < 0.4-                     , text            >= 1.2.4 && < 1.3-                     , bytestring      >= 0.10.12 && < 0.12-                     , binary          >= 0.8.8 && < 0.9+                     , verset          >= 0.0.1.8 && < 0.0.2.0+                     , text            >= 1.2.5 && < 2.1+                     , bytestring      >= 0.11.3 && < 0.12+                     , binary          >= 0.8.9 && < 0.9                      , hedgehog   other-modules:       AbifTests                      , FastaTests

@@ -12,7 +12,7 @@ -} module Examples.AddComment where -import           Protolude+import           Verset  import qualified Hyrax.Abif.Read as H import qualified Hyrax.Abif.Write as H

@@ -12,7 +12,7 @@ -} module Examples.ReadAb1 where -import           Protolude+import           Verset  import qualified Hyrax.Abif.Read as H 

@@ -12,7 +12,7 @@ -} module Examples.RemoveComments where -import           Protolude+import           Verset  import qualified Hyrax.Abif as H import qualified Hyrax.Abif.Read as H

@@ -27,7 +27,7 @@     , describeElemType     ) where -import           Protolude+import           Verset import qualified Data.ByteString.Lazy as BSL  

@@ -16,7 +16,7 @@     , parseFasta     ) where -import           Protolude hiding (lines)+import           Verset hiding (lines) import qualified Data.Text as Txt  -- | FASTA data

@@ -91,7 +91,7 @@     , complementNucleotides     ) where -import           Protolude+import           Verset import qualified Data.Text as Txt import qualified Data.Text.Encoding as TxtE import qualified Data.List as Lst

@@ -36,7 +36,7 @@     , getDirectory     ) where -import           Protolude+import           Verset import qualified Data.Text as Txt import qualified Data.Text.Encoding as TxtE import qualified Data.Binary as B@@ -171,7 +171,7 @@     readArray :: B.Get n -> B.Get [n]     readArray getFn = do       e <- B.isEmpty-      if e then return []+      if e then pure []       else do         c <- getFn         cs <- readArray getFn

@@ -34,7 +34,7 @@     , Base (..)     ) where -import           Protolude+import           Verset import qualified Data.Text as Txt import qualified Data.Text.Encoding as TxtE import qualified Data.Binary as B

@@ -5,7 +5,7 @@ module AbifTests (tests) where  -import           Protolude+import           Verset import qualified Data.List as Lst import qualified Data.Text as Txt import qualified Data.Text.Encoding as TxtE@@ -120,7 +120,7 @@ readArray :: B.Get n -> B.Get [n] readArray getFn = do   e <- B.isEmpty-  if e then return []+  if e then pure []   else do     c <- getFn     cs <- readArray getFn

@@ -4,7 +4,7 @@  module FastaTests (tests) where -import           Protolude+import           Verset import           Hedgehog import qualified Hedgehog.Gen as Gen 

@@ -3,7 +3,7 @@  module Generators where -import           Protolude+import           Verset import qualified Data.Text as Txt import           Hedgehog import qualified Hedgehog.Gen as Gen

@@ -1,6 +1,6 @@ {-# LANGUAGE NoImplicitPrelude #-} -import           Protolude+import           Verset import qualified System.IO as IO  import qualified AbifTests