hyraxAbif 0.2.3.3 → 0.2.3.4
raw patch · 7 files changed
+8/−7 lines, 7 filesbinary-addedPVP ok
version bump matches the API change (PVP)
API changes (from Hackage documentation)
Files
- README.md +5/−5
- docs/docs/eg_acag_acgt.png binary
- docs/docs/eg_acag_acgt03.png binary
- docs/docs/eg_acag_acgt_mix.png binary
- docs/docs/eg_actg.png binary
- docs/docs/eg_multi_mix.png binary
- hyraxAbif.cabal +3/−2
README.md view
@@ -148,7 +148,7 @@ ACTG ``` -+ Here there is a single FASTA with a single read with a weigh of 1 (100%). The chromatogram for this AB1 shows perfect traces for the input `ACTG` nucleotides@@ -169,7 +169,7 @@ ACTG ``` -+ Two input FASTA files both with a weigh of 1. You can see in the second trace that the third nucleotide is a `T` (the trace is green). Exactly what the base-calling software (phred & recall etc) decide to call the base as depends on your settings and software choices. @@ -189,7 +189,7 @@ ACTG ``` -+ Here the second fasta has a weight of 0.3 and you can see the traces are 30% of the height of the top ones. @@ -206,7 +206,7 @@ ACTG ``` -+ The single input FASTA has an `AT` mix at the third nucleotide. The first read has a weight of 1 and the second a weight of 0.3. Notice that the maximum weight is 1, e.g. the first `A` has the same intensity as the second even though the first one has the reads weighted both 1 and 0.3@@ -226,7 +226,7 @@ _G ``` -+ ---
+ docs/docs/eg_acag_acgt.png view
binary file changed (absent → 5964 bytes)
+ docs/docs/eg_acag_acgt03.png view
binary file changed (absent → 5789 bytes)
+ docs/docs/eg_acag_acgt_mix.png view
binary file changed (absent → 4817 bytes)
+ docs/docs/eg_actg.png view
binary file changed (absent → 3576 bytes)
+ docs/docs/eg_multi_mix.png view
binary file changed (absent → 5050 bytes)
hyraxAbif.cabal view
@@ -1,6 +1,6 @@ cabal-version: 2.2 name: hyraxAbif-version: 0.2.3.3+version: 0.2.3.4 synopsis: Modules for parsing, generating and manipulating AB1 files. homepage: https://github.com/hyraxbio/hyraxAbif/#readme license: BSD-3-Clause@@ -12,8 +12,9 @@ build-type: Simple extra-source-files: README.md extra-doc-files: docs/*.png+ , docs/docs/*.png description: This library provides functionality for parsing, modifying, writing and generating ABIF files- <<docs/eg_multi_mix.png>>+ <<data:image/png;base64,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>> . Any AB1 file conforming to the standard at <http://www6.appliedbiosystems.com/support/software_community/ABIF_File_Format.pdf> should be supported. .