hPDB 1.2.0.2 → 1.2.0.3
raw patch · 3 files changed
+6/−3 lines, 3 filesPVP: major bump suggested
API removals or changes: PVP suggests a major version bump
API changes (from Hackage documentation)
- Bio.PDB: Atom :: !String -> !Int -> !Vector3 -> !Double -> !Double -> !String -> !String -> !String -> !Bool -> Atom
- Bio.PDB: Chain :: !Char -> List Residue -> Chain
- Bio.PDB: Model :: !Int -> List Chain -> Model
- Bio.PDB: Residue :: !String -> !Int -> List Atom -> !Char -> Residue
- Bio.PDB: Structure :: List Model -> Structure
- Bio.PDB: atName :: Atom -> !String
- Bio.PDB: atSerial :: Atom -> !Int
- Bio.PDB: atoms :: Residue -> List Atom
- Bio.PDB: bFactor :: Atom -> !Double
- Bio.PDB: chainId :: Chain -> !Char
- Bio.PDB: chains :: Model -> List Chain
- Bio.PDB: charge :: Atom -> !String
- Bio.PDB: coord :: Atom -> !Vector3
- Bio.PDB: element :: Atom -> !String
- Bio.PDB: hetatm :: Atom -> !Bool
- Bio.PDB: insCode :: Residue -> !Char
- Bio.PDB: modelId :: Model -> !Int
- Bio.PDB: models :: Structure -> List Model
- Bio.PDB: occupancy :: Atom -> !Double
- Bio.PDB: resName :: Residue -> !String
- Bio.PDB: resSeq :: Residue -> !Int
- Bio.PDB: residues :: Chain -> List Residue
- Bio.PDB: segid :: Atom -> !String
- Bio.PDB.EventParser.ExperimentalMethods: ElectronCrystallography :: ExpMethod
- Bio.PDB.EventParser.ExperimentalMethods: ElectronMicroscopy :: ExpMethod
- Bio.PDB.EventParser.ExperimentalMethods: FiberDiffraction :: ExpMethod
- Bio.PDB.EventParser.ExperimentalMethods: NeutronDiffraction :: ExpMethod
- Bio.PDB.EventParser.ExperimentalMethods: OtherExpMethod :: !ByteString -> ExpMethod
- Bio.PDB.EventParser.ExperimentalMethods: SolidStateNMR :: ExpMethod
- Bio.PDB.EventParser.ExperimentalMethods: SolutionNMR :: ExpMethod
- Bio.PDB.EventParser.ExperimentalMethods: SolutionScattering :: ExpMethod
- Bio.PDB.EventParser.ExperimentalMethods: XRayDiffraction :: ExpMethod
- Bio.PDB.EventParser.PDBEvents: ANISOU :: !Int -> !String -> !String -> !Char -> !Int -> !Char -> !Char -> !Int -> !Int -> !Int -> !Int -> !Int -> !Int -> !String -> !String -> !String -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: ATID :: (String, String, Char, Int, Char) -> ATID
- Bio.PDB.EventParser.PDBEvents: ATOM :: !Int -> !String -> !String -> !Char -> !Int -> !Char -> !Char -> !Vector3 -> !Double -> !Double -> !String -> !String -> !String -> !Bool -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: AUTHOR :: !Int -> ![String] -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: Antiparallel :: StrandSenseT
- Bio.PDB.EventParser.PDBEvents: CAVEAT :: !Int -> !String -> !String -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: CISPEP :: !Int -> !RESID -> !RESID -> !Int -> Maybe Double -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: COMPND :: !Int -> ![(String, String)] -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: CONECT :: ![Int] -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: CRYST1 :: !Double -> !Double -> !Double -> !Double -> !Double -> !Double -> !String -> !Int -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: DBREF :: !String -> !Char -> !Int -> !Char -> !Int -> !Char -> !String -> !String -> !String -> !Int -> !Char -> !Int -> !Char -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: END :: PDBEvent
- Bio.PDB.EventParser.PDBEvents: ENDMDL :: PDBEvent
- Bio.PDB.EventParser.PDBEvents: EXPDTA :: !Int -> ![ExpMethod] -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: ElectronCrystallography :: ExpMethod
- Bio.PDB.EventParser.PDBEvents: ElectronMicroscopy :: ExpMethod
- Bio.PDB.EventParser.PDBEvents: FORMUL :: !Int -> !String -> !Int -> !Bool -> ![String] -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: FiberDiffraction :: ExpMethod
- Bio.PDB.EventParser.PDBEvents: HEADER :: !String -> !String -> !String -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: HELIX :: Int -> RESID -> RESID -> HelixT -> String -> Int -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: HET :: !String -> !Char -> !Int -> !Char -> !Int -> !String -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: HETNAM :: !Int -> !String -> !String -> !Bool -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: HYDBND :: !ATID -> !Char -> !ATID -> !Char -> !ATID -> !Char -> !String -> !String -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: JRNL :: !Int -> ![(String, String)] -> !Bool -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: KEYWDS :: !Int -> ![String] -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: LINK :: !ATID -> !Char -> !ATID -> !Char -> !String -> !String -> Maybe Double -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: MASTER :: !Int -> !Int -> !Int -> !Int -> !Int -> !Int -> !Int -> !Int -> !Int -> !Int -> !Int -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: MDLTYP :: !Int -> ![String] -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: MODEL :: !Int -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: MODRES :: !String -> !RESID -> !String -> !String -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: MTRIXn :: !Int -> !Bool -> !Int -> ![Vector3] -> ![Double] -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: NUMMDL :: !Int -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: NeutronDiffraction :: ExpMethod
- Bio.PDB.EventParser.PDBEvents: OBSLTE :: !Int -> !String -> !String -> ![String] -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: ORIGXn :: Int -> [Vector3] -> [Double] -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: OtherExpMethod :: !ByteString -> ExpMethod
- Bio.PDB.EventParser.PDBEvents: PDBIgnoredLine :: ByteString -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: PDBParseError :: !Int -> !Int -> !String -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: Parallel :: StrandSenseT
- Bio.PDB.EventParser.PDBEvents: REMARK :: !Int -> ![String] -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: RESID :: (String, Char, Int, Char) -> RESID
- Bio.PDB.EventParser.PDBEvents: REVDAT :: !Int -> !Int -> !String -> !String -> !Int -> ![String] -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: SCALEn :: Int -> [Vector3] -> [Double] -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: SEQADV :: !String -> Maybe RESID -> !String -> !String -> !String -> Maybe Int -> !String -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: SEQRES :: !Int -> !Char -> !Int -> ![String] -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: SHEET :: Int -> String -> Int -> Maybe StrandSenseT -> RESID -> RESID -> Maybe ATID -> Maybe ATID -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: SIGATM :: !Int -> !String -> !String -> !Char -> !Int -> !Char -> !Char -> !Vector3 -> !Double -> !Double -> !String -> !String -> !String -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: SIGUIJ :: !Int -> !String -> !String -> !Char -> !Int -> !Char -> !Char -> !Int -> !Int -> !Int -> !Int -> !Int -> !Int -> !String -> !String -> !String -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: SITE :: !Int -> !String -> !Int -> ![RESID] -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: SLTBRG :: !ATID -> !Char -> !ATID -> !Char -> !String -> !String -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: SOURCE :: !Int -> ![(String, String)] -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: SPLIT :: !Int -> ![String] -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: SPRSDE :: !Int -> !String -> !String -> ![String] -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: SSBOND :: !Int -> RESID -> RESID -> !String -> !String -> !Double -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: SolidStateNMR :: ExpMethod
- Bio.PDB.EventParser.PDBEvents: SolutionNMR :: ExpMethod
- Bio.PDB.EventParser.PDBEvents: SolutionScattering :: ExpMethod
- Bio.PDB.EventParser.PDBEvents: TER :: !Int -> !String -> !Char -> !Int -> !Char -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: TITLE :: !Int -> !String -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: TVECT :: !Int -> Vector3 -> PDBEvent
- Bio.PDB.EventParser.PDBEvents: Vector3 :: UnpkScalar -> UnpkScalar -> UnpkScalar -> Vector3
- Bio.PDB.EventParser.PDBEvents: XRayDiffraction :: ExpMethod
- Bio.PDB.EventParser.PDBEvents: a :: PDBEvent -> !Double
- Bio.PDB.EventParser.PDBEvents: aList :: PDBEvent -> ![String]
- Bio.PDB.EventParser.PDBEvents: accessionCode :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: advResidue :: PDBEvent -> Maybe RESID
- Bio.PDB.EventParser.PDBEvents: alpha :: PDBEvent -> !Double
- Bio.PDB.EventParser.PDBEvents: altloc :: PDBEvent -> !Char
- Bio.PDB.EventParser.PDBEvents: altloc1 :: PDBEvent -> !Char
- Bio.PDB.EventParser.PDBEvents: altloc2 :: PDBEvent -> !Char
- Bio.PDB.EventParser.PDBEvents: altlocH :: PDBEvent -> !Char
- Bio.PDB.EventParser.PDBEvents: angle :: PDBEvent -> Maybe Double
- Bio.PDB.EventParser.PDBEvents: at1 :: PDBEvent -> !ATID
- Bio.PDB.EventParser.PDBEvents: at2 :: PDBEvent -> !ATID
- Bio.PDB.EventParser.PDBEvents: atH :: PDBEvent -> !ATID
- Bio.PDB.EventParser.PDBEvents: atmNum :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: atoms :: PDBEvent -> ![Int]
- Bio.PDB.EventParser.PDBEvents: atomtype :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: b :: PDBEvent -> !Double
- Bio.PDB.EventParser.PDBEvents: beta :: PDBEvent -> !Double
- Bio.PDB.EventParser.PDBEvents: bfactor :: PDBEvent -> !Double
- Bio.PDB.EventParser.PDBEvents: bondLen :: PDBEvent -> !Double
- Bio.PDB.EventParser.PDBEvents: c :: PDBEvent -> !Double
- Bio.PDB.EventParser.PDBEvents: chain :: PDBEvent -> !Char
- Bio.PDB.EventParser.PDBEvents: charge :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: classification :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: codes :: PDBEvent -> ![String]
- Bio.PDB.EventParser.PDBEvents: comment :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: compNum :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: cont :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: content :: PDBEvent -> ![(String, String)]
- Bio.PDB.EventParser.PDBEvents: continuation :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: coords :: PDBEvent -> !Vector3
- Bio.PDB.EventParser.PDBEvents: curAt :: PDBEvent -> Maybe ATID
- Bio.PDB.EventParser.PDBEvents: database :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: date :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: dbResname :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: dbSeqNum :: PDBEvent -> Maybe Int
- Bio.PDB.EventParser.PDBEvents: depDate :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: description :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: details :: PDBEvent -> ![String]
- Bio.PDB.EventParser.PDBEvents: elt :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: endInsCodeInPDBRef :: PDBEvent -> !Char
- Bio.PDB.EventParser.PDBEvents: endInsCodePDB :: PDBEvent -> !Char
- Bio.PDB.EventParser.PDBEvents: endRes :: PDBEvent -> RESID
- Bio.PDB.EventParser.PDBEvents: endSeqNumInDb :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: endSeqNumPDB :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: entries :: PDBEvent -> ![String]
- Bio.PDB.EventParser.PDBEvents: expMethods :: PDBEvent -> ![ExpMethod]
- Bio.PDB.EventParser.PDBEvents: formula :: PDBEvent -> ![String]
- Bio.PDB.EventParser.PDBEvents: gamma :: PDBEvent -> !Double
- Bio.PDB.EventParser.PDBEvents: helixClass :: PDBEvent -> HelixT
- Bio.PDB.EventParser.PDBEvents: hetId :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: hetatm :: PDBEvent -> !Bool
- Bio.PDB.EventParser.PDBEvents: idCode :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: iniInsCodeInPDBRef :: PDBEvent -> !Char
- Bio.PDB.EventParser.PDBEvents: iniInsCodePDB :: PDBEvent -> !Char
- Bio.PDB.EventParser.PDBEvents: iniRes :: PDBEvent -> RESID
- Bio.PDB.EventParser.PDBEvents: iniSeqNumInDb :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: iniSeqNumPDB :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: insCode :: PDBEvent -> !Char
- Bio.PDB.EventParser.PDBEvents: isFirst :: PDBEvent -> !Bool
- Bio.PDB.EventParser.PDBEvents: isWater :: PDBEvent -> !Bool
- Bio.PDB.EventParser.PDBEvents: len :: PDBEvent -> Int
- Bio.PDB.EventParser.PDBEvents: linkdist :: PDBEvent -> Maybe Double
- Bio.PDB.EventParser.PDBEvents: modDat :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: modId :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: modNum :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: modTyp :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: n :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: name :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: no :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: notSynonym :: PDBEvent -> !Bool
- Bio.PDB.EventParser.PDBEvents: num :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: numAts :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: numConect :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: numHelix :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: numHet :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: numMaster :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: numRemark :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: numSeqres :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: numSheet :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: numSite :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: numStrands :: PDBEvent -> Int
- Bio.PDB.EventParser.PDBEvents: numTurn :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: numXform :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: numres :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: o :: PDBEvent -> ![Vector3]
- Bio.PDB.EventParser.PDBEvents: occupancy :: PDBEvent -> !Double
- Bio.PDB.EventParser.PDBEvents: pdbCode :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: pdbId :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: pdbid :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: prevAt :: PDBEvent -> Maybe ATID
- Bio.PDB.EventParser.PDBEvents: relMol :: PDBEvent -> !Bool
- Bio.PDB.EventParser.PDBEvents: res1 :: PDBEvent -> RESID
- Bio.PDB.EventParser.PDBEvents: res2 :: PDBEvent -> RESID
- Bio.PDB.EventParser.PDBEvents: resList :: PDBEvent -> ![String]
- Bio.PDB.EventParser.PDBEvents: resid :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: residue :: PDBEvent -> !RESID
- Bio.PDB.EventParser.PDBEvents: residues :: PDBEvent -> ![RESID]
- Bio.PDB.EventParser.PDBEvents: resins :: PDBEvent -> !Char
- Bio.PDB.EventParser.PDBEvents: resname :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: restype :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: segid :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: sense :: PDBEvent -> Maybe StrandSenseT
- Bio.PDB.EventParser.PDBEvents: seqDbAccCode :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: seqDbIdCode :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: seqDbName :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: seqNum :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: serial :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: sheetId :: PDBEvent -> String
- Bio.PDB.EventParser.PDBEvents: siteid :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: spcGrp :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: stdRes :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: strandId :: PDBEvent -> Int
- Bio.PDB.EventParser.PDBEvents: symOp1 :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: symOp2 :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: symop1 :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: symop2 :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: t :: PDBEvent -> ![Double]
- Bio.PDB.EventParser.PDBEvents: text :: PDBEvent -> ![String]
- Bio.PDB.EventParser.PDBEvents: this :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: title :: PDBEvent -> !String
- Bio.PDB.EventParser.PDBEvents: tokens :: PDBEvent -> ![(String, String)]
- Bio.PDB.EventParser.PDBEvents: u_1_1 :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: u_1_2 :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: u_1_3 :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: u_2_2 :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: u_2_3 :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: u_3_3 :: PDBEvent -> !Int
- Bio.PDB.EventParser.PDBEvents: v3x :: Vector3 -> UnpkScalar
- Bio.PDB.EventParser.PDBEvents: v3y :: Vector3 -> UnpkScalar
- Bio.PDB.EventParser.PDBEvents: v3z :: Vector3 -> UnpkScalar
- Bio.PDB.EventParser.PDBEvents: vec :: PDBEvent -> Vector3
- Bio.PDB.EventParser.PDBEvents: zValue :: PDBEvent -> !Int
- Bio.PDB.EventParser.StrandSense: Antiparallel :: StrandSenseT
- Bio.PDB.EventParser.StrandSense: Parallel :: StrandSenseT
- Bio.PDB.Structure: Atom :: !String -> !Int -> !Vector3 -> !Double -> !Double -> !String -> !String -> !String -> !Bool -> Atom
- Bio.PDB.Structure: Chain :: !Char -> List Residue -> Chain
- Bio.PDB.Structure: Model :: !Int -> List Chain -> Model
- Bio.PDB.Structure: Residue :: !String -> !Int -> List Atom -> !Char -> Residue
- Bio.PDB.Structure: Structure :: List Model -> Structure
- Bio.PDB.Structure: atName :: Atom -> !String
- Bio.PDB.Structure: atSerial :: Atom -> !Int
- Bio.PDB.Structure: atoms :: Residue -> List Atom
- Bio.PDB.Structure: bFactor :: Atom -> !Double
- Bio.PDB.Structure: chainId :: Chain -> !Char
- Bio.PDB.Structure: chains :: Model -> List Chain
- Bio.PDB.Structure: charge :: Atom -> !String
- Bio.PDB.Structure: coord :: Atom -> !Vector3
- Bio.PDB.Structure: element :: Atom -> !String
- Bio.PDB.Structure: hetatm :: Atom -> !Bool
- Bio.PDB.Structure: insCode :: Residue -> !Char
- Bio.PDB.Structure: modelId :: Model -> !Int
- Bio.PDB.Structure: models :: Structure -> List Model
- Bio.PDB.Structure: occupancy :: Atom -> !Double
- Bio.PDB.Structure: resName :: Residue -> !String
- Bio.PDB.Structure: resSeq :: Residue -> !Int
- Bio.PDB.Structure: residues :: Chain -> List Residue
- Bio.PDB.Structure: segid :: Atom -> !String
- Bio.PDB.Structure.Vector: Vector3 :: UnpkScalar -> UnpkScalar -> UnpkScalar -> Vector3
- Bio.PDB.Structure.Vector: v3x :: Vector3 -> UnpkScalar
- Bio.PDB.Structure.Vector: v3y :: Vector3 -> UnpkScalar
- Bio.PDB.Structure.Vector: v3z :: Vector3 -> UnpkScalar
+ Bio.PDB: [Atom] :: !String -> !Int -> !Vector3 -> !Double -> !Double -> !String -> !String -> !String -> !Bool -> Atom
+ Bio.PDB: [Chain] :: !Char -> List Residue -> Chain
+ Bio.PDB: [Model] :: !Int -> List Chain -> Model
+ Bio.PDB: [Residue] :: !String -> !Int -> List Atom -> !Char -> Residue
+ Bio.PDB: [Structure] :: List Model -> Structure
+ Bio.PDB: [atName] :: Atom -> !String
+ Bio.PDB: [atSerial] :: Atom -> !Int
+ Bio.PDB: [atoms] :: Residue -> List Atom
+ Bio.PDB: [bFactor] :: Atom -> !Double
+ Bio.PDB: [chainId] :: Chain -> !Char
+ Bio.PDB: [chains] :: Model -> List Chain
+ Bio.PDB: [charge] :: Atom -> !String
+ Bio.PDB: [coord] :: Atom -> !Vector3
+ Bio.PDB: [element] :: Atom -> !String
+ Bio.PDB: [hetatm] :: Atom -> !Bool
+ Bio.PDB: [insCode] :: Residue -> !Char
+ Bio.PDB: [modelId] :: Model -> !Int
+ Bio.PDB: [models] :: Structure -> List Model
+ Bio.PDB: [occupancy] :: Atom -> !Double
+ Bio.PDB: [resName] :: Residue -> !String
+ Bio.PDB: [resSeq] :: Residue -> !Int
+ Bio.PDB: [residues] :: Chain -> List Residue
+ Bio.PDB: [segid] :: Atom -> !String
+ Bio.PDB.EventParser.ExperimentalMethods: [ElectronCrystallography] :: ExpMethod
+ Bio.PDB.EventParser.ExperimentalMethods: [ElectronMicroscopy] :: ExpMethod
+ Bio.PDB.EventParser.ExperimentalMethods: [FiberDiffraction] :: ExpMethod
+ Bio.PDB.EventParser.ExperimentalMethods: [NeutronDiffraction] :: ExpMethod
+ Bio.PDB.EventParser.ExperimentalMethods: [OtherExpMethod] :: !ByteString -> ExpMethod
+ Bio.PDB.EventParser.ExperimentalMethods: [SolidStateNMR] :: ExpMethod
+ Bio.PDB.EventParser.ExperimentalMethods: [SolutionNMR] :: ExpMethod
+ Bio.PDB.EventParser.ExperimentalMethods: [SolutionScattering] :: ExpMethod
+ Bio.PDB.EventParser.ExperimentalMethods: [XRayDiffraction] :: ExpMethod
+ Bio.PDB.EventParser.PDBEvents: [ANISOU] :: !Int -> !String -> !String -> !Char -> !Int -> !Char -> !Char -> !Int -> !Int -> !Int -> !Int -> !Int -> !Int -> !String -> !String -> !String -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [ATID] :: (String, String, Char, Int, Char) -> ATID
+ Bio.PDB.EventParser.PDBEvents: [ATOM] :: !Int -> !String -> !String -> !Char -> !Int -> !Char -> !Char -> !Vector3 -> !Double -> !Double -> !String -> !String -> !String -> !Bool -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [AUTHOR] :: !Int -> ![String] -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [Antiparallel] :: StrandSenseT
+ Bio.PDB.EventParser.PDBEvents: [CAVEAT] :: !Int -> !String -> !String -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [CISPEP] :: !Int -> !RESID -> !RESID -> !Int -> Maybe Double -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [COMPND] :: !Int -> ![(String, String)] -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [CONECT] :: ![Int] -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [CRYST1] :: !Double -> !Double -> !Double -> !Double -> !Double -> !Double -> !String -> !Int -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [DBREF] :: !String -> !Char -> !Int -> !Char -> !Int -> !Char -> !String -> !String -> !String -> !Int -> !Char -> !Int -> !Char -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [ENDMDL] :: PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [END] :: PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [EXPDTA] :: !Int -> ![ExpMethod] -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [ElectronCrystallography] :: ExpMethod
+ Bio.PDB.EventParser.PDBEvents: [ElectronMicroscopy] :: ExpMethod
+ Bio.PDB.EventParser.PDBEvents: [FORMUL] :: !Int -> !String -> !Int -> !Bool -> ![String] -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [FiberDiffraction] :: ExpMethod
+ Bio.PDB.EventParser.PDBEvents: [HEADER] :: !String -> !String -> !String -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [HELIX] :: Int -> RESID -> RESID -> HelixT -> String -> Int -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [HETNAM] :: !Int -> !String -> !String -> !Bool -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [HET] :: !String -> !Char -> !Int -> !Char -> !Int -> !String -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [HYDBND] :: !ATID -> !Char -> !ATID -> !Char -> !ATID -> !Char -> !String -> !String -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [JRNL] :: !Int -> ![(String, String)] -> !Bool -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [KEYWDS] :: !Int -> ![String] -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [LINK] :: !ATID -> !Char -> !ATID -> !Char -> !String -> !String -> Maybe Double -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [MASTER] :: !Int -> !Int -> !Int -> !Int -> !Int -> !Int -> !Int -> !Int -> !Int -> !Int -> !Int -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [MDLTYP] :: !Int -> ![String] -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [MODEL] :: !Int -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [MODRES] :: !String -> !RESID -> !String -> !String -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [MTRIXn] :: !Int -> !Bool -> !Int -> ![Vector3] -> ![Double] -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [NUMMDL] :: !Int -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [NeutronDiffraction] :: ExpMethod
+ Bio.PDB.EventParser.PDBEvents: [OBSLTE] :: !Int -> !String -> !String -> ![String] -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [ORIGXn] :: Int -> [Vector3] -> [Double] -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [OtherExpMethod] :: !ByteString -> ExpMethod
+ Bio.PDB.EventParser.PDBEvents: [PDBIgnoredLine] :: ByteString -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [PDBParseError] :: !Int -> !Int -> !String -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [Parallel] :: StrandSenseT
+ Bio.PDB.EventParser.PDBEvents: [REMARK] :: !Int -> ![String] -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [RESID] :: (String, Char, Int, Char) -> RESID
+ Bio.PDB.EventParser.PDBEvents: [REVDAT] :: !Int -> !Int -> !String -> !String -> !Int -> ![String] -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [SCALEn] :: Int -> [Vector3] -> [Double] -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [SEQADV] :: !String -> Maybe RESID -> !String -> !String -> !String -> Maybe Int -> !String -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [SEQRES] :: !Int -> !Char -> !Int -> ![String] -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [SHEET] :: Int -> String -> Int -> Maybe StrandSenseT -> RESID -> RESID -> Maybe ATID -> Maybe ATID -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [SIGATM] :: !Int -> !String -> !String -> !Char -> !Int -> !Char -> !Char -> !Vector3 -> !Double -> !Double -> !String -> !String -> !String -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [SIGUIJ] :: !Int -> !String -> !String -> !Char -> !Int -> !Char -> !Char -> !Int -> !Int -> !Int -> !Int -> !Int -> !Int -> !String -> !String -> !String -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [SITE] :: !Int -> !String -> !Int -> ![RESID] -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [SLTBRG] :: !ATID -> !Char -> !ATID -> !Char -> !String -> !String -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [SOURCE] :: !Int -> ![(String, String)] -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [SPLIT] :: !Int -> ![String] -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [SPRSDE] :: !Int -> !String -> !String -> ![String] -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [SSBOND] :: !Int -> RESID -> RESID -> !String -> !String -> !Double -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [SolidStateNMR] :: ExpMethod
+ Bio.PDB.EventParser.PDBEvents: [SolutionNMR] :: ExpMethod
+ Bio.PDB.EventParser.PDBEvents: [SolutionScattering] :: ExpMethod
+ Bio.PDB.EventParser.PDBEvents: [TER] :: !Int -> !String -> !Char -> !Int -> !Char -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [TITLE] :: !Int -> !String -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [TVECT] :: !Int -> Vector3 -> PDBEvent
+ Bio.PDB.EventParser.PDBEvents: [Vector3] :: UnpkScalar -> UnpkScalar -> UnpkScalar -> Vector3
+ Bio.PDB.EventParser.PDBEvents: [XRayDiffraction] :: ExpMethod
+ Bio.PDB.EventParser.PDBEvents: [aList] :: PDBEvent -> ![String]
+ Bio.PDB.EventParser.PDBEvents: [a] :: PDBEvent -> !Double
+ Bio.PDB.EventParser.PDBEvents: [accessionCode] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [advResidue] :: PDBEvent -> Maybe RESID
+ Bio.PDB.EventParser.PDBEvents: [alpha] :: PDBEvent -> !Double
+ Bio.PDB.EventParser.PDBEvents: [altloc1] :: PDBEvent -> !Char
+ Bio.PDB.EventParser.PDBEvents: [altloc2] :: PDBEvent -> !Char
+ Bio.PDB.EventParser.PDBEvents: [altlocH] :: PDBEvent -> !Char
+ Bio.PDB.EventParser.PDBEvents: [altloc] :: PDBEvent -> !Char
+ Bio.PDB.EventParser.PDBEvents: [angle] :: PDBEvent -> Maybe Double
+ Bio.PDB.EventParser.PDBEvents: [at1] :: PDBEvent -> !ATID
+ Bio.PDB.EventParser.PDBEvents: [at2] :: PDBEvent -> !ATID
+ Bio.PDB.EventParser.PDBEvents: [atH] :: PDBEvent -> !ATID
+ Bio.PDB.EventParser.PDBEvents: [atmNum] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [atoms] :: PDBEvent -> ![Int]
+ Bio.PDB.EventParser.PDBEvents: [atomtype] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [b] :: PDBEvent -> !Double
+ Bio.PDB.EventParser.PDBEvents: [beta] :: PDBEvent -> !Double
+ Bio.PDB.EventParser.PDBEvents: [bfactor] :: PDBEvent -> !Double
+ Bio.PDB.EventParser.PDBEvents: [bondLen] :: PDBEvent -> !Double
+ Bio.PDB.EventParser.PDBEvents: [c] :: PDBEvent -> !Double
+ Bio.PDB.EventParser.PDBEvents: [chain] :: PDBEvent -> !Char
+ Bio.PDB.EventParser.PDBEvents: [charge] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [classification] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [codes] :: PDBEvent -> ![String]
+ Bio.PDB.EventParser.PDBEvents: [comment] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [compNum] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [cont] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [content] :: PDBEvent -> ![(String, String)]
+ Bio.PDB.EventParser.PDBEvents: [continuation] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [coords] :: PDBEvent -> !Vector3
+ Bio.PDB.EventParser.PDBEvents: [curAt] :: PDBEvent -> Maybe ATID
+ Bio.PDB.EventParser.PDBEvents: [database] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [date] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [dbResname] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [dbSeqNum] :: PDBEvent -> Maybe Int
+ Bio.PDB.EventParser.PDBEvents: [depDate] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [description] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [details] :: PDBEvent -> ![String]
+ Bio.PDB.EventParser.PDBEvents: [elt] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [endInsCodeInPDBRef] :: PDBEvent -> !Char
+ Bio.PDB.EventParser.PDBEvents: [endInsCodePDB] :: PDBEvent -> !Char
+ Bio.PDB.EventParser.PDBEvents: [endRes] :: PDBEvent -> RESID
+ Bio.PDB.EventParser.PDBEvents: [endSeqNumInDb] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [endSeqNumPDB] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [entries] :: PDBEvent -> ![String]
+ Bio.PDB.EventParser.PDBEvents: [expMethods] :: PDBEvent -> ![ExpMethod]
+ Bio.PDB.EventParser.PDBEvents: [formula] :: PDBEvent -> ![String]
+ Bio.PDB.EventParser.PDBEvents: [gamma] :: PDBEvent -> !Double
+ Bio.PDB.EventParser.PDBEvents: [helixClass] :: PDBEvent -> HelixT
+ Bio.PDB.EventParser.PDBEvents: [hetId] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [hetatm] :: PDBEvent -> !Bool
+ Bio.PDB.EventParser.PDBEvents: [idCode] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [iniInsCodeInPDBRef] :: PDBEvent -> !Char
+ Bio.PDB.EventParser.PDBEvents: [iniInsCodePDB] :: PDBEvent -> !Char
+ Bio.PDB.EventParser.PDBEvents: [iniRes] :: PDBEvent -> RESID
+ Bio.PDB.EventParser.PDBEvents: [iniSeqNumInDb] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [iniSeqNumPDB] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [insCode] :: PDBEvent -> !Char
+ Bio.PDB.EventParser.PDBEvents: [isFirst] :: PDBEvent -> !Bool
+ Bio.PDB.EventParser.PDBEvents: [isWater] :: PDBEvent -> !Bool
+ Bio.PDB.EventParser.PDBEvents: [len] :: PDBEvent -> Int
+ Bio.PDB.EventParser.PDBEvents: [linkdist] :: PDBEvent -> Maybe Double
+ Bio.PDB.EventParser.PDBEvents: [modDat] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [modId] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [modNum] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [modTyp] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [n] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [name] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [no] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [notSynonym] :: PDBEvent -> !Bool
+ Bio.PDB.EventParser.PDBEvents: [numAts] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [numConect] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [numHelix] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [numHet] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [numMaster] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [numRemark] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [numSeqres] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [numSheet] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [numSite] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [numStrands] :: PDBEvent -> Int
+ Bio.PDB.EventParser.PDBEvents: [numTurn] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [numXform] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [num] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [numres] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [o] :: PDBEvent -> ![Vector3]
+ Bio.PDB.EventParser.PDBEvents: [occupancy] :: PDBEvent -> !Double
+ Bio.PDB.EventParser.PDBEvents: [pdbCode] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [pdbId] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [pdbid] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [prevAt] :: PDBEvent -> Maybe ATID
+ Bio.PDB.EventParser.PDBEvents: [relMol] :: PDBEvent -> !Bool
+ Bio.PDB.EventParser.PDBEvents: [res1] :: PDBEvent -> RESID
+ Bio.PDB.EventParser.PDBEvents: [res2] :: PDBEvent -> RESID
+ Bio.PDB.EventParser.PDBEvents: [resList] :: PDBEvent -> ![String]
+ Bio.PDB.EventParser.PDBEvents: [resid] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [residue] :: PDBEvent -> !RESID
+ Bio.PDB.EventParser.PDBEvents: [residues] :: PDBEvent -> ![RESID]
+ Bio.PDB.EventParser.PDBEvents: [resins] :: PDBEvent -> !Char
+ Bio.PDB.EventParser.PDBEvents: [resname] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [restype] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [segid] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [sense] :: PDBEvent -> Maybe StrandSenseT
+ Bio.PDB.EventParser.PDBEvents: [seqDbAccCode] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [seqDbIdCode] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [seqDbName] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [seqNum] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [serial] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [sheetId] :: PDBEvent -> String
+ Bio.PDB.EventParser.PDBEvents: [siteid] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [spcGrp] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [stdRes] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [strandId] :: PDBEvent -> Int
+ Bio.PDB.EventParser.PDBEvents: [symOp1] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [symOp2] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [symop1] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [symop2] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [t] :: PDBEvent -> ![Double]
+ Bio.PDB.EventParser.PDBEvents: [text] :: PDBEvent -> ![String]
+ Bio.PDB.EventParser.PDBEvents: [this] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [title] :: PDBEvent -> !String
+ Bio.PDB.EventParser.PDBEvents: [tokens] :: PDBEvent -> ![(String, String)]
+ Bio.PDB.EventParser.PDBEvents: [u_1_1] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [u_1_2] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [u_1_3] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [u_2_2] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [u_2_3] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [u_3_3] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.PDBEvents: [v3x] :: Vector3 -> UnpkScalar
+ Bio.PDB.EventParser.PDBEvents: [v3y] :: Vector3 -> UnpkScalar
+ Bio.PDB.EventParser.PDBEvents: [v3z] :: Vector3 -> UnpkScalar
+ Bio.PDB.EventParser.PDBEvents: [vec] :: PDBEvent -> Vector3
+ Bio.PDB.EventParser.PDBEvents: [zValue] :: PDBEvent -> !Int
+ Bio.PDB.EventParser.StrandSense: [Antiparallel] :: StrandSenseT
+ Bio.PDB.EventParser.StrandSense: [Parallel] :: StrandSenseT
+ Bio.PDB.Structure: [Atom] :: !String -> !Int -> !Vector3 -> !Double -> !Double -> !String -> !String -> !String -> !Bool -> Atom
+ Bio.PDB.Structure: [Chain] :: !Char -> List Residue -> Chain
+ Bio.PDB.Structure: [Model] :: !Int -> List Chain -> Model
+ Bio.PDB.Structure: [Residue] :: !String -> !Int -> List Atom -> !Char -> Residue
+ Bio.PDB.Structure: [Structure] :: List Model -> Structure
+ Bio.PDB.Structure: [atName] :: Atom -> !String
+ Bio.PDB.Structure: [atSerial] :: Atom -> !Int
+ Bio.PDB.Structure: [atoms] :: Residue -> List Atom
+ Bio.PDB.Structure: [bFactor] :: Atom -> !Double
+ Bio.PDB.Structure: [chainId] :: Chain -> !Char
+ Bio.PDB.Structure: [chains] :: Model -> List Chain
+ Bio.PDB.Structure: [charge] :: Atom -> !String
+ Bio.PDB.Structure: [coord] :: Atom -> !Vector3
+ Bio.PDB.Structure: [element] :: Atom -> !String
+ Bio.PDB.Structure: [hetatm] :: Atom -> !Bool
+ Bio.PDB.Structure: [insCode] :: Residue -> !Char
+ Bio.PDB.Structure: [modelId] :: Model -> !Int
+ Bio.PDB.Structure: [models] :: Structure -> List Model
+ Bio.PDB.Structure: [occupancy] :: Atom -> !Double
+ Bio.PDB.Structure: [resName] :: Residue -> !String
+ Bio.PDB.Structure: [resSeq] :: Residue -> !Int
+ Bio.PDB.Structure: [residues] :: Chain -> List Residue
+ Bio.PDB.Structure: [segid] :: Atom -> !String
+ Bio.PDB.Structure.Vector: [Vector3] :: UnpkScalar -> UnpkScalar -> UnpkScalar -> Vector3
+ Bio.PDB.Structure.Vector: [v3x] :: Vector3 -> UnpkScalar
+ Bio.PDB.Structure.Vector: [v3y] :: Vector3 -> UnpkScalar
+ Bio.PDB.Structure.Vector: [v3z] :: Vector3 -> UnpkScalar
- Bio.PDB: covalentRadius :: (IsString a1, Show a1, Fractional a, Eq a1) => a1 -> a
+ Bio.PDB: covalentRadius :: (Eq a1, Fractional a, Show a1, IsString a1) => a1 -> a
- Bio.PDB: firstModel :: Iterable a Model => a -> Maybe Model
+ Bio.PDB: firstModel :: (Iterable a Model) => a -> Maybe Model
- Bio.PDB.EventParser.HelixTypes: code2helix :: (Num a, Eq a) => a -> HelixT
+ Bio.PDB.EventParser.HelixTypes: code2helix :: (Eq a, Num a) => a -> HelixT
- Bio.PDB.EventParser.PDBEventParser: parsePDBRecords :: Monad m => t -> ByteString -> (b -> PDBEvent -> m b) -> b -> m b
+ Bio.PDB.EventParser.PDBEventParser: parsePDBRecords :: Monad m => t -> ByteString -> (t1 -> PDBEvent -> m t1) -> t1 -> m t1
- Bio.PDB.Fasta: fastaGappedSequence :: Iterable a Residue => a -> [Char]
+ Bio.PDB.Fasta: fastaGappedSequence :: (Iterable a Residue) => a -> [Char]
- Bio.PDB.Fasta: fastaSequence :: Iterable a Residue => a -> [Char]
+ Bio.PDB.Fasta: fastaSequence :: (Iterable a Residue) => a -> [Char]
- Bio.PDB.Iterable: firstModel :: Iterable a Model => a -> Maybe Model
+ Bio.PDB.Iterable: firstModel :: (Iterable a Model) => a -> Maybe Model
- Bio.PDB.Structure: vperpends :: Vector3 -> [Vector3] -> Vector3
+ Bio.PDB.Structure: vperpends :: Foldable t => Vector3 -> t Vector3 -> Vector3
- Bio.PDB.Structure.Elements: covalentRadius :: (IsString a1, Show a1, Fractional a, Eq a1) => a1 -> a
+ Bio.PDB.Structure.Elements: covalentRadius :: (Eq a1, Fractional a, Show a1, IsString a1) => a1 -> a
- Bio.PDB.Structure.Vector: vperpends :: Vector3 -> [Vector3] -> Vector3
+ Bio.PDB.Structure.Vector: vperpends :: Foldable t => Vector3 -> t Vector3 -> Vector3
Files
- Bio/PDB/IO/OpenAnyFile.hs +3/−0
- changelog +2/−2
- hPDB.cabal +1/−1
Bio/PDB/IO/OpenAnyFile.hs view
@@ -53,6 +53,9 @@ #if MIN_VERSION_zlib(0,5,4) Nothing #endif+#if MIN_VERSION_zlib(0,6,1)+ True+#endif -- Upper bound: compression rate never exceeded 4.7 for big test files. --bzipParams c = BZip.DecompressParams BZip.DefaultMemoryLevel (fromIntegral (BS.length c * 7 + 4*1024*1024)) -- Upper bound: compression rate never exceeded 6.7 for big test files + 4MiB buffering.
changelog view
@@ -1,7 +1,7 @@ -*-Changelog-*- -1.2.0.2 Dec 2014- * Works with GHC 7.10+1.2.0.2 Apr 2015+ * Update for zlib version 0.6.1.0. 1.2.0.1 Dec 2014 * Relaxed upper bounds
hPDB.cabal view
@@ -1,5 +1,5 @@ name: hPDB-version: 1.2.0.2+version: 1.2.0.3 synopsis: Protein Databank file format library homepage: https://github.com/BioHaskell/hPDB stability: stable